Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0857 ATGGCAGCTCTCAAACATCGGAGCCAAGGTCGTGGTTTGGTCCAAATGGACAGTACACAGAGAGTTACCTTGTCCAAGCTGCCGGGGAAGGGGTTATACTCCTTGTACAGAGTGTGGAATAGAAAGATCAAGATCAGACTGTCCAAAGTGTGGGTATTGTTACTTGCCACCAGTGTTCAGGAGCTCGTGTTACTTGGGAAGAATCAATTGATGAAAGACCATGGGAAAGAGCACGTTCCATTGGTTTGTCCTCCTCCCAGTTCCCCACTCAAAGTGAAGGAAGATGATGAAGTTGATAATTTGGACATAAAACTGGATGTGAAGAAAAAATCGAAGCGCGTTTACCCGTCACCATCTCCTGAAGTTGGATTAAAGATTAGTCGCTCATTGAAAGATCTCAACGCAAAAACCGGTCTGTTCAGCAAGAGAATGAAGATTATCCATCGTGATCCCATGCTTCATGCTCAGAGAGTGGCGGCAATTAAGAAATCCAAGGGAACTGATGCAGCTAGAAAGCAAACCTCTGAAACTATGAAAGCTTTCTTTAGTAATCTAGAAAATCGCCACAAAAGGAGCATTGTCATGAAAGTTACAAGGCTATTGATGTCAGGGTTAACATTTGACATCACCCCAGACTACATTTTTCGAGTGTCAAGTTTGAGCAAACCATGGCATAGGAGACACTACTGTCCAGAACTGAAGGATAGTTCGGTGGATCGGCAATTCACGTGCCGGCTATGTGGGGAAAAAGGCCATAAAGGAAGAACATGCAGCAAGTTAAGGATAAGCCATCGGAACGGCAGACCTGTGAAAATTTATCGCTGTAAAAATTGTCGTCAATATGGCCATAATCTCAGGACGTGCCCTCAACTAGTTGCTGCCTCCAAAACGACAGCTTCTCCAAGACCATACAAGTGTCGTTTGTGCCACAAGAATGGCCACAATGTCAGGACATGTCCTACTACAAGAGCTATTAGTATTACTCCACATGCTCAAGATGAATAG 1005 0.4428 MAALKHRSQGRGLVQMDSTQRVTLSKLPGKGLYSLYRVWNRKIKIRLSKVWVLLLATSVQELVLLGKNQLMKDHGKEHVPLVCPPPSSPLKVKEDDEVDNLDIKLDVKKKSKRVYPSPSPEVGLKISRSLKDLNAKTGLFSKRMKIIHRDPMLHAQRVAAIKKSKGTDAARKQTSETMKAFFSNLENRHKRSIVMKVTRLLMSGLTFDITPDYIFRVSSLSKPWHRRHYCPELKDSSVDRQFTCRLCGEKGHKGRTCSKLRISHRNGRPVKIYRCKNCRQYGHNLRTCPQLVAASKTTASPRPYKCRLCHKNGHNVRTCPTTRAISITPHAQDE 334
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0857 334 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 88 258 - -
Lele53g0857 334 SUPERFAMILY Retrovirus zinc finger-like domains 266 322 IPR036875 GO:0003676|GO:0008270
Lele53g0857 334 SMART c2hcfinal6 274 290 IPR001878 GO:0003676|GO:0008270
Lele53g0857 334 SMART c2hcfinal6 305 321 IPR001878 GO:0003676|GO:0008270
Lele53g0857 334 SMART c2hcfinal6 243 259 IPR001878 GO:0003676|GO:0008270
Lele53g0857 334 Pfam Zinc knuckle 301 321 IPR025829 -
Lele53g0857 334 Gene3D - 272 326 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele53g0857 Lele-ChrLele53 18305512 18308624 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0857 273 325 C2H2 Transcription Factor Family AT5G20220 43.396 2.80e-07 50.1