Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0856 ATGACTTCTCCTTCGGTCGTCGTCTTCGTTGTTGCAGTTGCAGATGAGAAAACAGAGTTGCATCTGTCCCATATCAAAGTTGAAGACGAGAAAACAAAAACCTCAGCGGGGAAAGCCAAGGGAAGAAGAAAGGACTCAGCGGCAATAATCCCAAAGATGTTGCAGCTTCACTATCTATCTTCTTCTTCCTCCCTCACGACGACGCAGTATCCCATTCAACTCTGCCCTCCATATATTTTCTACCCAAAAAAGTCCCTTTCCTTTTGCCCTTCTTCAACTTCCCGTGCCTCAAACTTCTCCCTGACCCTTTCATCCTCCCGCAGAAACCCATTTTCTATCAAATGCCGCCAATCCGAGTACTTCGAACAACAAAGCTTCACCAGACCCATCAGAAATGCAAACGGAAGCGATTCAGTTGGAGCTCTGCCGCCTAGGGTTTATGTGGGTCACTCGGTTTACAAAGGGAAGGCTGCGCTTACGGTGACTCCCAGGCCTCCAGAGTTTGCTTTATTGGAGTCAGGGGCATTCAAAGTATCTCGGGAAGGTTATGTGCTGCTTCAGTTCGCTCCTGCAGTTGGTATGCGCCAGTATGACTGGAACAGAAAGCAGGTATTCTCTCTATCAGTGAGTGAAATGGGAAATGTAATTAGCCTTGGTGCAAGGGATTCGTGTGAATTTTTTCATGATCCTTTTAAGGGGAAGAGTGATGAAGGTAAAATCAGAAAAGTTTTGAAGGTGGAGCCACTTCCAGATGGTTCTGGTCACTTTTTTAACCTAAGTGTTCAAAACAAGATTGAGAACGTGGATGAAAGCATCTATATCCCTATTACAAAAGCAGAGCTATCAGTTTTCAACTCAATTTTCAATTTTATCATGCCATACCTTCTCGGCTGGCATGCATTTGCAAATTCTATAAAACCAGAGGATCAAGGAAGATTGAATAACGCCAATCCAAGGTATGGAGGAGACTTTGAATGGAGCAGATAG 987 0.4458 MTSPSVVVFVVAVADEKTELHLSHIKVEDEKTKTSAGKAKGRRKDSAAIIPKMLQLHYLSSSSSLTTTQYPIQLCPPYIFYPKKSLSFCPSSTSRASNFSLTLSSSRRNPFSIKCRQSEYFEQQSFTRPIRNANGSDSVGALPPRVYVGHSVYKGKAALTVTPRPPEFALLESGAFKVSREGYVLLQFAPAVGMRQYDWNRKQVFSLSVSEMGNVISLGARDSCEFFHDPFKGKSDEGKIRKVLKVEPLPDGSGHFFNLSVQNKIENVDESIYIPITKAELSVFNSIFNFIMPYLLGWHAFANSIKPEDQGRLNNANPRYGGDFEWSR 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0856 328 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 137 312 - -
Lele53g0856 328 Pfam Whirly transcription factor 152 286 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lele53g0856 328 SUPERFAMILY ssDNA-binding transcriptional regulator domain 144 328 IPR009044 GO:0003677|GO:0006355
Lele53g0856 328 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 109 328 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lele53g0856 328 Gene3D Transcriptional Coactivator Pc4; Chain A 139 316 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0856 Lele-ChrLele53 18293278 18297295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0856 99 328 Whirly Transcription Factor Family AT1G14410 66.957 1.06e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Lele53g0856 Whirly 1.1e-60 CL0609