Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0850 ATGAATTCTCTGCATCATCCAAACCAACCTGACAATAACATAGTTCTTCATTCTCCTAATAATGGAACACATGCCCACGTGGGAAGACCATGGATTCTCAATGAACAGAAGAATCTGTTTGTTGTTTCAAACAATCACAGAGGAAGGAGGAAGAAGGATGATAAAAAGAAGAAATATATAGGTGATCCGAGGGATTTGCATGCTTTGAAAGTAGACAAGGGAATAAGATTTCAAACTCGTAAGCTGAAGAAGTTCTCATATAAGGTCTTGGAAGATGCCACACGCAGGTTCAGCACTAAGAACTTGATTGGGCAGGGAGGTTTTGCTGATGTTTATAAGGGATATATCTCCCACTACATCATGAATGCTGCAAAACCACATGAAGGATTCCCCATTGCTGTTAAGAGAATCAGAAGACTTGGATCACGAGGACACGAAGAATGGCTGAATGAAGTGATATATTTGAGCAAAATTAGCCATCCGAACGTGGTGAATCTCATAGGGTATTGCCGTGAGGGTCAGCATAGAATGCTTGTGATTGAGTACATGATGGAAGGAAGCTTGGAGGACCATCTCTCCAAAGGAAAGCTGAACTGGAACAGAAGAATTAACATAGCACTTGGGGCTGCAAGGGGTTTAGAGTATCTTCACATATTCGAAACACCAGTAATTCATCGTGATGTTAAATCTTCAAATATCCTGCTAGATGCTAACTTCAATGCAAAGCTCTCTGACTTCGGACTGGCTAGAGATGGACCTGAAGATGACCAGTCCCATGTATCCACAAGAATCCTTGGCACTAGAGGCTACTTTCCCCCTGAGTACATAGGCACAGGGCATTTAACTCTGAAAGCTGATGTTTATAGCTTTGGAGTGGTTCTACTAGAGATATTATCAGGCTCTGGTGCAGTTAGGAAACATTCAGACGGGGTAGTGGGGAATCTTGCCCAGTGGGCTGAACCATTTCTTAGTAACAAATTGCAACTTCACCGAGTTATAGATAAGAGACTAGGGCAAAGTTTTCCCATGGAAGGAGCCTATGATTTGGCTCAACTAATACTAAATTGCCTCAGCTTAAACCCCAAGCATCGCCCAACAATGGTTGAAGTTGTGGCTGCCTTGGAACAGATAGAACTAAACTTAGACTTTCTTTATAAGAGAATGTATAGTAGAAGAACCAGAACTCATTCTTATTCTCACTCTTAA 1206 0.4171 MNSLHHPNQPDNNIVLHSPNNGTHAHVGRPWILNEQKNLFVVSNNHRGRRKKDDKKKKYIGDPRDLHALKVDKGIRFQTRKLKKFSYKVLEDATRRFSTKNLIGQGGFADVYKGYISHYIMNAAKPHEGFPIAVKRIRRLGSRGHEEWLNEVIYLSKISHPNVVNLIGYCREGQHRMLVIEYMMEGSLEDHLSKGKLNWNRRINIALGAARGLEYLHIFETPVIHRDVKSSNILLDANFNAKLSDFGLARDGPEDDQSHVSTRILGTRGYFPPEYIGTGHLTLKADVYSFGVVLLEILSGSGAVRKHSDGVVGNLAQWAEPFLSNKLQLHRVIDKRLGQSFPMEGAYDLAQLILNCLSLNPKHRPTMVEVVAALEQIELNLDFLYKRMYSRRTRTHSYSHS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0850 401 MobiDBLite consensus disorder prediction 1 20 - -
Lele53g0850 401 SUPERFAMILY Protein kinase-like (PK-like) 79 378 IPR011009 -
Lele53g0850 401 Pfam Protein tyrosine and serine/threonine kinase 99 374 IPR001245 GO:0004672|GO:0006468
Lele53g0850 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Lele53g0850 401 Gene3D Phosphorylase Kinase; domain 1 77 182 - -
Lele53g0850 401 MobiDBLite consensus disorder prediction 1 21 - -
Lele53g0850 401 Gene3D Transferase(Phosphotransferase) domain 1 183 390 - -
Lele53g0850 401 SMART serkin_6 97 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele53g0850 401 ProSitePatterns Protein kinases ATP-binding region signature. 103 135 IPR017441 GO:0005524
Lele53g0850 401 FunFam PTI1-like tyrosine-protein kinase 3 183 385 - -
Lele53g0850 401 ProSiteProfiles Protein kinase domain profile. 97 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele53g0850 401 PANTHER OS01G0588500 PROTEIN-RELATED 58 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0850 Lele-ChrLele53 18236047 18238803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0850 83 374 Glycoside Hydrolase AT3G07070 45.973 1.55e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele53g0850 PK_Tyr_Ser-Thr 6.9e-50 CL0016