Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0844 ATGCTTGTTGCACACAATCATGATCAGAATATCATCATGCAACTTTTGAAGATTTGTGACAGGCCGATCGTAGCAAGCGCCGATGAAATGGCTTTCTTCCCAGCAAATTTCATATTACAGAACCCTCACCAAGAAGACCACCACCATCAACCTCCAACCTCTCTCAACTCACTTCTCCCTCAAGATTATCATGGAGGATCGTCACTCCTAGGGAAGAGATCTATGACATTTTCAGGGCTTGAACTTGGAGGTGAAGAGGGAAACAATGGAGATGAAGACTTGTCTGATGATGGATCTCAAGCTGGGGAGAAGAAGAGAAGGCTGAACATGGAACAAGTGAAAACGCTTGAGAAGAGCTTTGAGCTTGGAAACAAGCTTGAACCTGGGAGAAAAATGCAGCTGGCTAGAGCTCTTGGTCTGCAACCAAGGCAGATTGCTATATGGTTCCAGAACAGAAGAGCAAGGTGGAAGACAAAGCAGCTAGAGAAAGACTATGATCTTCTCAAAAGACAATATGATGCTATCAAAGCGGATAATGATGCCCTTCAAGCTCAAAACCAACAACTCCAAGCAGAGATATTGGCACTGAAAAGCAGAGACGTACCAACTGAATCTATAAACCTGAATAAGGAAACTGAGGGATCTTGTAGCAATCGGAGTGAGAATAGTTCAGATATTAAGTTGGATATCTCAAGAACACCTGCTATAGACAGTCCTTTATGTAATCATCATCATCATCATCAGATTACAAGCAGAACCTTATTCCCATCATCAGCATCCAATAATTCTGCAGGTAGACCTTCTTCAGGAGTGGTCGCTCAGCTTTTTCAAACCTCTTCAATACCAGAACTTCATTGCCATAATCTGAAGAATATTGATCATATGGTGGTGAAAGAAGAGAGCTTAAGCAACATGTTTTGTGGGATTGATGATCAAACTGGGTTATGGCCTTGGTTGGAGCAGCAACATTTCAATTGA 978 0.4223 MLVAHNHDQNIIMQLLKICDRPIVASADEMAFFPANFILQNPHQEDHHHQPPTSLNSLLPQDYHGGSSLLGKRSMTFSGLELGGEEGNNGDEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPGRKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYDAIKADNDALQAQNQQLQAEILALKSRDVPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLCNHHHHHQITSRTLFPSSASNNSAGRPSSGVVAQLFQTSSIPELHCHNLKNIDHMVVKEESLSNMFCGIDDQTGLWPWLEQQHFN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0844 325 MobiDBLite consensus disorder prediction 205 224 - -
Lele53g0844 325 CDD homeodomain 104 160 IPR001356 GO:0003677
Lele53g0844 325 Gene3D - 96 165 - -
Lele53g0844 325 SMART HOX_1 102 163 IPR001356 GO:0003677
Lele53g0844 325 Pfam Homeodomain 104 157 IPR001356 GO:0003677
Lele53g0844 325 MobiDBLite consensus disorder prediction 80 108 - -
Lele53g0844 325 ProSiteProfiles 'Homeobox' domain profile. 99 159 IPR001356 GO:0003677
Lele53g0844 325 SUPERFAMILY Homeodomain-like 94 161 IPR009057 -
Lele53g0844 325 PRINTS Lambda-repressor HTH signature 139 155 IPR000047 GO:0003677
Lele53g0844 325 PRINTS Lambda-repressor HTH signature 130 139 IPR000047 GO:0003677
Lele53g0844 325 Coils Coil 151 199 - -
Lele53g0844 325 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 81 241 IPR045224 GO:0003700
Lele53g0844 325 Pfam Homeobox associated leucine zipper 159 198 IPR003106 GO:0006355|GO:0043565
Lele53g0844 325 FunFam Homeobox-leucine zipper protein ATHB-13 96 163 - -
Lele53g0844 325 ProSitePatterns 'Homeobox' domain signature. 134 157 IPR017970 GO:0000981|GO:0006355
Lele53g0844 325 MobiDBLite consensus disorder prediction 43 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0844 Lele-ChrLele53 18185668 18188003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0844 30 325 Homeobox Transcription Factor Family AT1G69780 59.868 9.38e-113 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele53g0844 Homeodomain 4.6e-15 CL0123