Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0843 ATGGCAGTGCAAGTGCGATTAGATTTGAGAATGTCTAGCAGAAGATCTGGTTCCATAGAGATCAGTGATTCCCAGATCAACGACCTCGTCTCCAAGTTACAACGCCTTATTCCCGAGCTTCAATCCCCTCGCTCCCACAAGGCATCGGCGGCGAAGGTGTTGAAGGAGACATGCAACTACATAAAGAAGTTGCACAGAGAAGTAGATGATCTGAGTGACCGATTATCTGAGCTTTTGTCCACTACCGACTCCGAGAGTGCGGAAGCTGCCATTCTTAGGAGCTTACTTCTGGTGTCGGTTGCCTTGAGAAGTGGTGGAGTGGCTTTGTTGGGCAGTGATAGTAGTGGTGGTGTTGGAGTTCTAGTTGGGAAATTGAGGTCTGGCAATGACGCCTGCACTGCTTATGTGACATTCAGAGATGCTTATTCTCAAGAAACAGCCTGCTTGCTCAGTGGTGCTACTATTTTAGATCAACGTGTGTGCATAACACGCTGGGGGCAGAATACAGATGAACATGACTTTTGGAGCGGGCCTTCCTATAGGGATGCTGAGGAAACTACTTCAACTCACCCTCAAAGCAATGATTTTGTGTCATCTGCCGGAGAAGCAGTTACCGTGGCACAAGATGTTGTCAAGACCATGCTAGCAAAGGGATATGTTCTTGGTAAGGACGCATTAGCCAATGCCAAAGCTTTCGATGAGTCTCACCAAGTTTCAGCAACTGCCTCAGCAAAGGTTGCTGAGCTGAACCAGAGAATTGGCCTCACCGAGAAAATATCTGCTGGCGTTAATGCTGTTAGGTCCGTGGATCAGAGATATCATGTCTCAGAAACAGCAATGTCAGCCGCATCAGCAACGGGAAGAACGGTCGCAGCAGCAGCAAATACCATGGTAAATAGCAGCTATTTTTCCAAGGGAGCCTTGTGGATGTCAGGTATTTTATCCCGAGCCGCAGATGCAGCGGCTGATCTGGGTAGAGCCGCAGATTCATCAACTGATCCGGTTAGCCGCGTTGGTGCTGGTAGTAGGCAGTGA 1035 0.4879 MAVQVRLDLRMSSRRSGSIEISDSQINDLVSKLQRLIPELQSPRSHKASAAKVLKETCNYIKKLHREVDDLSDRLSELLSTTDSESAEAAILRSLLLVSVALRSGGVALLGSDSSGGVGVLVGKLRSGNDACTAYVTFRDAYSQETACLLSGATILDQRVCITRWGQNTDEHDFWSGPSYRDAEETTSTHPQSNDFVSSAGEAVTVAQDVVKTMLAKGYVLGKDALANAKAFDESHQVSATASAKVAELNQRIGLTEKISAGVNAVRSVDQRYHVSETAMSAASATGRTVAAAANTMVNSSYFSKGALWMSGILSRAADAAADLGRAADSSTDPVSRVGAGSRQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0843 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 25 80 IPR036638 GO:0046983
Lele53g0843 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 64 IPR011598 GO:0046983
Lele53g0843 344 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 130 327 - -
Lele53g0843 344 Gene3D - 23 93 IPR036638 GO:0046983
Lele53g0843 344 Pfam Helix-loop-helix DNA-binding domain 25 64 IPR011598 GO:0046983
Lele53g0843 344 MobiDBLite consensus disorder prediction 325 344 - -
Lele53g0843 344 CDD bHLH_AtPRE_like 15 81 - -
Lele53g0843 344 Coils Coil 61 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0843 Lele-ChrLele53 18175391 18180940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0843 21 97 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 62.821 7.07e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele53g0843 HLH 6.4e-06 No_clan