Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0825 ATGGACTTGATTCCAACCCCCACCGCCTCTGCCGCCACAGCCCACTCCGACTCTCTGCATACTTCAACCCCACCGCCTACCCACCCCACCAACACCGCCAAGTCTCCCTCTTTCACTAACGGCTCCTTCAAGCGCCACCACCCTTCGCCTCATCCGCCACTGCCCGCGGTGGTTTCCTACAAGGAATGTCTCAAGAATCACGCCGCCAGCATCGGCGGCCACGCGCTTGATGGTTGCGGCGAGTTCATGCCTTCCTCCGCCTACAACCCCAGTGACCCGCGCTCCCTCAAATGCGCCGCGTGTGGCTGCCACCGCAACTTCCACCGCCGTGATCCCCAAGAGCTTCCCTCCACCCCCAACTTCTTAAGCTGCTTCTATCCACCCCTGCCGGCGCCACCTCCGCCTCAGCTAGCTCCCCGGGGGTTAAGCCCGAGCACCAGCCCAAGCATTAGCCCGAGCTCAAGTCCCAGCAGCGCCAGTCCGGGCCCGTTATCAAGCCCGTCGCCGCCACCGGTCTCTCATTTCCCTCTTTCTTCCTACCACGTATCGGCACCGCATATGCTGATAGCGCTCGGGAGCGCTTATTCTGGTCCGTCCGATGAGCGACATCGGAGCTTCATGAATTCTTCAGCGATGAAGATTACGGAGAAGGAGAGCCCAGGTGGGAGAAAGAGATACAGAACCAAATTCAGCCAAGAACAGAAAGAGAAGATGTTTCAGTTCTCTGAGAAATTGGGTTGGAGAATGCAGAAAGGAGATGATAGAACGGTCCAAGATTTCTGCAATGAGGTTGGGGTTTCAAGAGGAGTGTTCAAGGTTTGGATGCACAACAACAAGAACACTTTCAGGAAAAAACCAGAAACTGGGAATACCCAACAAACTGAGAAAATCAATGAAGGTGATGCAGCTGGTCGCCGAGGTGGTGGTGGGTTTAATTGTGATATTAACGAAGACGATAATCACAGGAATGAAGGTAGCTGTATTAATCTTCAAGTGTCTGTTAATGGATCTTCTTCTTGA 1020 0.5441 MDLIPTPTASAATAHSDSLHTSTPPPTHPTNTAKSPSFTNGSFKRHHPSPHPPLPAVVSYKECLKNHAASIGGHALDGCGEFMPSSAYNPSDPRSLKCAACGCHRNFHRRDPQELPSTPNFLSCFYPPLPAPPPPQLAPRGLSPSTSPSISPSSSPSSASPGPLSSPSPPPVSHFPLSSYHVSAPHMLIALGSAYSGPSDERHRSFMNSSAMKITEKESPGGRKRYRTKFSQEQKEKMFQFSEKLGWRMQKGDDRTVQDFCNEVGVSRGVFKVWMHNNKNTFRKKPETGNTQQTEKINEGDAAGRRGGGGFNCDINEDDNHRNEGSCINLQVSVNGSSS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0825 339 MobiDBLite consensus disorder prediction 281 324 - -
Lele53g0825 339 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
Lele53g0825 339 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 111 IPR006456 -
Lele53g0825 339 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 223 280 IPR006455 -
Lele53g0825 339 MobiDBLite consensus disorder prediction 1 54 - -
Lele53g0825 339 Gene3D - 208 283 - -
Lele53g0825 339 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 281 - -
Lele53g0825 339 FunFam Zinc-finger homeodomain protein 2 210 284 - -
Lele53g0825 339 Pfam ZF-HD protein dimerisation region 58 112 IPR006456 -
Lele53g0825 339 MobiDBLite consensus disorder prediction 284 298 - -
Lele53g0825 339 MobiDBLite consensus disorder prediction 142 161 - -
Lele53g0825 339 MobiDBLite consensus disorder prediction 133 171 - -
Lele53g0825 339 SUPERFAMILY Homeodomain-like 218 284 IPR009057 -
Lele53g0825 339 MobiDBLite consensus disorder prediction 9 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0825 Lele-ChrLele53 18006617 18007636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0825 1 290 ZF-HD Transcription Factor Family AT5G15210 42.069 3.93e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele53g0825 ZF-HD_dimer 5.2e-29 No_clan