Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0823 ATGGATGTGGCTGGACCTTCTGGTTCTGCACCAGCGGTGGATAACGACGCCAGGCCCGAACATGATGGGGATTGTAATGAGGACGAGCCTCTGATCCAGATGGCTGAGTGTCGCATTTGTCAAGAGGAGGATAGCGTTAAGAATTTGGAGACTCCTTGTGCCTGCAGCGGCAGCCTAAAGTTTGCTCACAGAAAGTGCGTTCAACATTGGTGCAATGAAAAGGGAGATATAATTTGTGAGATATGTCATCAGCCTTATCAACCAGGTTATACTGCCCCACCACCTCGTCCCCAACCTGAAGAAACTACCATTGACATAGGTGGGGGCTGGACAATCTCTGGCACACCTTTGGACTTGCGTGATCCTCGACTGTTGGCAATTGCTGAGGCAGAACGCCAATTCTTGGAAGCTGAATATGATGAGTATGCTGCTTCTAATGCCAGTGGAGCAGCCTTTTGCCGCTCTGCCGCTCTAATTCTAATGGCTCTATTACTCTTGCGGCATGCGCTTTCAGTTACAGATTCTGATGCTGACGATGATCCATCTACTTTTTTCTCTCTTTTCTTGCTTAGAGCAGCTGGATTTCTTTTACCCTGCTACATCATGGCTTGGGCAATCAGTATTTTGCAACGTCGGAGACAAAGACAAGAGGCGGCGGCATTGGCAGCAACCCAAGTTGCTTTTGTATTACAATCTGGACAGCGTAGGGGTCTGCAATTTGCCATAGCACCAGCTGGGCCCACCCTGACTTCGCAACAGGAGCATGTGTAG 771 0.4929 MDVAGPSGSAPAVDNDARPEHDGDCNEDEPLIQMAECRICQEEDSVKNLETPCACSGSLKFAHRKCVQHWCNEKGDIICEICHQPYQPGYTAPPPRPQPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDSDADDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPAGPTLTSQQEHV 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0823 256 SUPERFAMILY RING/U-box 35 87 - -
Lele53g0823 256 FunFam RING/FYVE/PHD zinc finger protein 25 93 - -
Lele53g0823 256 Coils Coil 125 145 - -
Lele53g0823 256 Pfam RING-variant domain 37 82 IPR011016 GO:0008270
Lele53g0823 256 SMART ringv_2 36 83 IPR011016 GO:0008270
Lele53g0823 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 92 IPR013083 -
Lele53g0823 256 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 20 216 IPR033275 -
Lele53g0823 256 MobiDBLite consensus disorder prediction 1 27 - -
Lele53g0823 256 Pfam Protein of unknown function (DUF3675) 88 206 IPR022143 -
Lele53g0823 256 ProSiteProfiles Zinc finger RING-CH-type profile. 29 89 IPR011016 GO:0008270
Lele53g0823 256 CDD RING_CH-C4HC3_MARCH 37 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0823 Lele-ChrLele53 17987916 17990772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0823 36 82 C3H Transcription Factor Family AT2G37950 42.000 2.84e-06 45.1