Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele53g0822 | ATGGAGGAGAGTAAGTTCGGGTGCAAGTATTGCAACAAGAAGTACCCATGTGGGAAGTCTCTGGGTGGACACATCAGAACTCATATGAGTAATGAACATTCATCGCATAAATCCAAGGAAGTTAAGACCAATGCCGATGATAGTGTCGTTAAGTTCGATGGTGGAAGGAAGCGGAAGAGAGATTTTGGGGCTGAAGAAGCTGCTTCTGAAAACCCCATTTATGGTCTCAGAGAGAATACCAAGAAGACAACGAAGCTCGTACATCGCAACGCTGCTATACAGAAAGAAAGATTCTGCAGAGAATGTGGGAAAGCCTTTTTGTCTCAGAAAGCTCTCTGCGGACACATGGCTTGTCACTCGGCGAAAGATAAAGGGACGATGAACAAGTTTGAGAACAATTCTGGGTTTAGCGTGAAGCAGAAAATGGTGACGATGGATGATAGCCAATCGGAAACAGAGACTTCTGCTCCGAATTATCCTCGGAGATCCAGAAGAATGAGGTTCACAAATAATCATCACCCTTCTTATGTTCCGTTGACGAATGGTTCTTCCTCTGTGTCTGAGGTGGAGCAAGAAGAAGAGATCGCTAAGTGTTTGATGTTATTGTCCAAAGACTCCGGCCAAAGGCGTCGTTTTGTTTTGCCTACTGAATCTTCGGACAACAAGTCTGTTAGGGTAGAGGTAAAATCACCGTCTGTGGATACGAGAATCACATTCAAAAATGGTTCAAAAAGCTTTATGTCTAATGGTGTTGAGATCGTGGAGGAGGAAGAGAAGAAGAAGAATGTGGTGCTGTATAAGAACATGAAGTTAAAGTCTGCTGAAATTATCGATTCTGATAATTCAGATTCTGGGTATTTCAGAAATCGTCCCAAAAAGTTGGAGTTGGATGTTCCAATTGATAATAAGCATCTCATCAGGAACAGGGAATTCAAAACCCCAAAAGTGGAAAACAGTTCAGGGTTTGAGGTGGACCGGAACTATGATTCTGAATATAGGAAGAAGATGCTGATCAAGAACAGAGGAATTTCCAGAAGAACTGAACCCAGAAAACTAATTTTGGAGGATTTGGACTATGATGATTCAACAGATGGATTGACAAGAGAAGAAGAGTTCATCAATTGGAGAAAGAGACCAAGCTATAATTCTCTTTGCCAAAACAATTCAATCGGTGTTCCTAACAAAAAGACACCACCAAATGGTTTTCACAGTGAGGGATCATGGAAGCAAGAGAGCTTAAACAGTGAAAAAATTATCAGTGGCTCTTATGATTCAGCATATGATAATGCGAGTGATGAAAGTAGCACAGACACTGATGCTTATCCTGCTCCGATATCTCATAGCAGCAGCAAGGTCATCATCAATGGAAAGAAGACTAACCAATCCAAGACGAAATTGAAGTCAAAGAAAACTAGGGAACATAGATGCCCCATCTGCTACAGAATTTTTAAGTCAGGCCAAGCTTTAGGAGGTCACAAAAGATCTCATTTTGTTGGAGGTTCTGAAGAGAACACAATAGTGATCAGGCAAGATTCTCCTGTTGTTCCATGCCTAATTGATCTCAATCTACCTGCTCCTGTTGATGATTAG | 1590 | 0.4151 | MEESKFGCKYCNKKYPCGKSLGGHIRTHMSNEHSSHKSKEVKTNADDSVVKFDGGRKRKRDFGAEEAASENPIYGLRENTKKTTKLVHRNAAIQKERFCRECGKAFLSQKALCGHMACHSAKDKGTMNKFENNSGFSVKQKMVTMDDSQSETETSAPNYPRRSRRMRFTNNHHPSYVPLTNGSSSVSEVEQEEEIAKCLMLLSKDSGQRRRFVLPTESSDNKSVRVEVKSPSVDTRITFKNGSKSFMSNGVEIVEEEEKKKNVVLYKNMKLKSAEIIDSDNSDSGYFRNRPKKLELDVPIDNKHLIRNREFKTPKVENSSGFEVDRNYDSEYRKKMLIKNRGISRRTEPRKLILEDLDYDDSTDGLTREEEFINWRKRPSYNSLCQNNSIGVPNKKTPPNGFHSEGSWKQESLNSEKIISGSYDSAYDNASDESSTDTDAYPAPISHSSSKVIINGKKTNQSKTKLKSKKTREHRCPICYRIFKSGQALGGHKRSHFVGGSEENTIVIRQDSPVVPCLIDLNLPAPVDD | 529 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele53g0822 | 529 | SUPERFAMILY | beta-beta-alpha zinc fingers | 98 | 496 | IPR036236 | - | |
| Lele53g0822 | 529 | MobiDBLite | consensus disorder prediction | 384 | 409 | - | - | |
| Lele53g0822 | 529 | SMART | c2h2final6 | 474 | 496 | IPR013087 | - | |
| Lele53g0822 | 529 | SMART | c2h2final6 | 97 | 119 | IPR013087 | - | |
| Lele53g0822 | 529 | SMART | c2h2final6 | 6 | 28 | IPR013087 | - | |
| Lele53g0822 | 529 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 28 | IPR013087 | - | |
| Lele53g0822 | 529 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 6 | 33 | IPR013087 | - | |
| Lele53g0822 | 529 | MobiDBLite | consensus disorder prediction | 143 | 159 | - | - | |
| Lele53g0822 | 529 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 528 | - | - | |
| Lele53g0822 | 529 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 99 | 119 | IPR013087 | - | |
| Lele53g0822 | 529 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 474 | 496 | IPR013087 | - | |
| Lele53g0822 | 529 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 97 | 124 | IPR013087 | - | |
| Lele53g0822 | 529 | MobiDBLite | consensus disorder prediction | 29 | 52 | - | - | |
| Lele53g0822 | 529 | MobiDBLite | consensus disorder prediction | 143 | 164 | - | - | |
| Lele53g0822 | 529 | MobiDBLite | consensus disorder prediction | 424 | 448 | - | - | |
| Lele53g0822 | 529 | Pfam | C2H2-type zinc finger | 474 | 496 | - | - | |
| Lele53g0822 | 529 | Pfam | C2H2-type zinc finger | 6 | 30 | - | - | |
| Lele53g0822 | 529 | Pfam | C2H2-type zinc finger | 99 | 121 | - | - | |
| Lele53g0822 | 529 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 476 | 496 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele53g0822 | Lele-ChrLele53 | 17979171 | 17980760 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele53g0822 | 1 | 529 | C2H2 Transcription Factor Family | AT1G26610 | 36.036 | 1.13e-71 | 234 |
Transcription factors information