Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0815 ATGGCTTCTGAAGCCGATGTTTCTGAGAATTCGTCCCTCTTTGACAGCTCGTTTGGATTCAGAGAGTTCTCTGTTTTCTTACCCTTCATCTTAGGCTTCTCCACCGATTCTTCCAGACAAGACAGTCGAGACCCAGATCAGGAAACTACAAATTCAGAAACTAGTAACACCCATGGCGAAAGAGTCGTCTTGATCAACCCCTTTACGCAAGGCATGGTGGTGATTGACGATAATTCGAGCCTTGAGACTCTGTTCCACGAAATTGGTATGAAAAATGGGCAACCGCCGGCGTCGAAGGAATCTATAGACGCGATGCCGAGTGTGGAAATCGGAGAAGGAGAAGGCGGCGGCGAGTGTGTGATTTGTTTGGAGGAATGGGAGGTTGGTGGGGTGTCGAAAGAGATGCCTTGTAAGCACAAGTTTCATCAGAACTGTATAGAGAAGTGGTTAGGAATCCATGGGTCTTGCCCCATTTGTAGATACCAGATGCCTGTGGATGAGAAAGAAGTGGGCAAGAGAGAGGAAGATGAACAAGAAGCAGGAGAAGGAGGAGAGAGAAGGAGGGTTGGCAGAGAAATTTGGGTGAGCTTCTCCTTTAGAAGTCAGAATACGAACCAAGCTCCTTCTGATAATTCCAGTGACCCTTCATCAAGTCCAAGAAGTGATTCTGAGGTAGATAATTAG 684 0.4693 MASEADVSENSSLFDSSFGFREFSVFLPFILGFSTDSSRQDSRDPDQETTNSETSNTHGERVVLINPFTQGMVVIDDNSSLETLFHEIGMKNGQPPASKESIDAMPSVEIGEGEGGGECVICLEEWEVGGVSKEMPCKHKFHQNCIEKWLGIHGSCPICRYQMPVDEKEVGKREEDEQEAGEGGERRRVGREIWVSFSFRSQNTNQAPSDNSSDPSSSPRSDSEVDN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0815 227 ProSiteProfiles Zinc finger RING-type profile. 119 160 IPR001841 -
Lele53g0815 227 SUPERFAMILY RING/U-box 118 165 - -
Lele53g0815 227 FunFam E3 ubiquitin-protein ligase RNF181 85 166 - -
Lele53g0815 227 MobiDBLite consensus disorder prediction 199 220 - -
Lele53g0815 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 35 164 - -
Lele53g0815 227 SMART ring_2 119 159 IPR001841 -
Lele53g0815 227 MobiDBLite consensus disorder prediction 36 61 - -
Lele53g0815 227 MobiDBLite consensus disorder prediction 199 227 - -
Lele53g0815 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 166 IPR013083 -
Lele53g0815 227 MobiDBLite consensus disorder prediction 168 187 - -
Lele53g0815 227 Pfam Ring finger domain 118 160 IPR001841 -
Lele53g0815 227 CDD RING-H2_PA-TM-RING 119 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0815 Lele-ChrLele53 17942466 17943149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0815 1 199 C3H Transcription Factor Family AT1G26800 47.573 4.32e-58 181