LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele53g0760	ATGGAGGAAAGGAAGTTCGTTTGCAAGTATTGCGACAAGAAGTACCCATGTGGGAAGTCTCTGGGTGGACACATCAAGACTCATATGAATATTGAACGTTATTCATTGTCTCAAACCAAGGAAGGTAGAATCGATGCCGATGATTGTGTCGTCAAGTTCGATGGTGGAAGGAAGAGGAAGAGAGATTTTGGGTCTGAAGAAGAAGCTGCTTCTGCAAACCCCATTTATGGTCTTCGAGAGAATCCCAAGAAAACAACGAGGTTCGTACATCCTTCCAACGTTGTTGTTGCACAACAAGAGAGGTTCTGCAAAGAATGTGGGAAATGCTTTCTGTCTCTGAAAGCTCTCTGCGGCCACATGGCTTTTCATTCGGAGAAAGATAAAGGGAAGATGATGACGAACAAGTTTGAGAACAATTATGGGTTTATTAGCATGAAGAAGCAGAAATTGATGGGGGATAGCCAATCGGACACTAAGACATCTGCTCCGAATCATCCTAGGAGATCCAGAAGAATGAGGTTGAAGACCGTGAATAGTGATAATAAAAACGATCACCCTTCTTTTGTTTCTTTGGCAAATGGTTCTTCTTCTGTGTCTGAGGTGGAGAAGGAACAAGAAGAGATCGCTAGGTGTTTGATGTTGCTGTCCAAAGACTCTAGCCATAGGGGTCTTTCTGTTTTGCCCACTGAATCTTCGGACAACAATTCTGTTGTGGTAGAGGCAAAATCACCGTCTGTGGACACCATTATTACTTTCAACAATGGTAAGAAACACTGTGTGTCTAGTGGTTTTGAGACCGTGAAGGGGAAGAAGAAGAAGAAGAAGAAGATGGTGCAGTATAATAGCATGAAGTTGAAGTCTGCTGCTGAGATTGTCGATTCTGATAATTCAGATTCTGGGAATTTCAGAACTGGTCCCAAAAAGTTGGATTTTTCAATTGATGGGTATCATAGGAATGGGGAATTCAAGACTCCAAAAGTGGAAATCAGGTCTGGGTGTGAGTTTGATCATTACTATGACACTGAATTGAGGAAGAAGATTCTAATCAAGAACAGAGGAAGAACCAGAAGCACTGAACCCAGAAAGCTAACTTTGGAGGATTTGGATTACAATACAACAGACGGTTCTACAAGGGAAGAAGGGTTCATCAATTGGAGAAAGAGACCAAGATATGATTATCTTTGCCAAAACAATTCAGTTGGTGTTTCTTGCAAAAGGACACCAAATGGTTTTCACAATGAGGGTTCATCATTGAAGCCAGAGAGCTTAAACAGTGAAAAAATTATCAATGGCTCTCATGATTCAGCAAAGGAAAGTGATGAAAGCAGCACAGACCCTGATGCTTATAATGCTCCGAGACCTCATAGCAGCAATGCCATCAATGGGAAGAAGATCACCAAGTTCAAGGAGAAATTGAAGTCAAAGAAAAGTAGGGACCATGAATGCCCAATCTGCTACAGAAAATTTAAGTCAGGCCAAGCATTAGGAGGCCACAAAAGGTCTCATTTTGTTGGAGGAGGTTCTGAGGAGAAAACAATAGTGATCAGACAAGATTCTTCTGTTGTTCCATGCTTGATTGATCTCAATCTACCTGCTCCTGTTGATGATTAG	1611	0.4165	MEERKFVCKYCDKKYPCGKSLGGHIKTHMNIERYSLSQTKEGRIDADDCVVKFDGGRKRKRDFGSEEEAASANPIYGLRENPKKTTRFVHPSNVVVAQQERFCKECGKCFLSLKALCGHMAFHSEKDKGKMMTNKFENNYGFISMKKQKLMGDSQSDTKTSAPNHPRRSRRMRLKTVNSDNKNDHPSFVSLANGSSSVSEVEKEQEEIARCLMLLSKDSSHRGLSVLPTESSDNNSVVVEAKSPSVDTIITFNNGKKHCVSSGFETVKGKKKKKKKMVQYNSMKLKSAAEIVDSDNSDSGNFRTGPKKLDFSIDGYHRNGEFKTPKVEIRSGCEFDHYYDTELRKKILIKNRGRTRSTEPRKLTLEDLDYNTTDGSTREEGFINWRKRPRYDYLCQNNSVGVSCKRTPNGFHNEGSSLKPESLNSEKIINGSHDSAKESDESSTDPDAYNAPRPHSSNAINGKKITKFKEKLKSKKSRDHECPICYRKFKSGQALGGHKRSHFVGGGSEEKTIVIRQDSSVVPCLIDLNLPAPVDD	536

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele53g0760	536	SUPERFAMILY	beta-beta-alpha zinc fingers	102	502	IPR036236	-
	Lele53g0760	536	SUPERFAMILY	beta-beta-alpha zinc fingers	2	33	IPR036236	-
	Lele53g0760	536	ProSitePatterns	Zinc finger C2H2 type domain signature.	482	502	IPR013087	-
	Lele53g0760	536	ProSitePatterns	Zinc finger C2H2 type domain signature.	8	28	IPR013087	-
	Lele53g0760	536	MobiDBLite	consensus disorder prediction	445	460	-	-
	Lele53g0760	536	ProSiteProfiles	Zinc finger C2H2 type domain profile.	6	33	IPR013087	-
	Lele53g0760	536	MobiDBLite	consensus disorder prediction	181	196	-	-
	Lele53g0760	536	ProSiteProfiles	Zinc finger C2H2 type domain profile.	480	502	IPR013087	-
	Lele53g0760	536	ProSiteProfiles	Zinc finger C2H2 type domain profile.	101	128	IPR013087	-
	Lele53g0760	536	MobiDBLite	consensus disorder prediction	150	196	-	-
	Lele53g0760	536	MobiDBLite	consensus disorder prediction	432	460	-	-
	Lele53g0760	536	Pfam	C2H2-type zinc finger	103	124	-	-
	Lele53g0760	536	Pfam	C2H2-type zinc finger	6	29	-	-
	Lele53g0760	536	Pfam	C2H2-type zinc finger	480	502	-	-
	Lele53g0760	536	ProSitePatterns	Zinc finger C2H2 type domain signature.	103	123	IPR013087	-
	Lele53g0760	536	PANTHER	C2H2-LIKE ZINC FINGER PROTEIN	1	535	-	-
	Lele53g0760	536	SMART	c2h2final6	480	502	IPR013087	-
	Lele53g0760	536	SMART	c2h2final6	6	28	IPR013087	-
	Lele53g0760	536	SMART	c2h2final6	101	123	IPR013087	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele53g0760	Lele-ChrLele53	17565587	17567197	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele53g0760	1	536	C2H2 Transcription Factor Family	AT1G26610	36.861	1.75e-75	244

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Lele53g0760		zf-C2H2_6	1.1e-09	CL0361