Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0757 ATGTCGTGGAATTTGAGTTTCTTGAAATTGACCATTAATTCACTCTTGCAGGCTGCTGAGAAGAAACAAAAAATGGTGAAGATTTGTTGCATTGGAGCTGGATATGTGGGTGGACCCACAATGGCCGTGATTGCCTTGAAATGTCCTGAGATCCAAGTCTCTGTGGTGGATATCGCCACCGCAAGAATCAATGCCTGGAACAGTGATCACCTCCCAATCTACGAGCCAGGCCTTGAAGAAGTGGTGAAGGAGTGCAGGGGAAGGAATCTTTTCTTTAGCACTGATGTGGAGAAGCATGTTGCAGAGGCTGACATAGTGTTCGTCTCGGTGAACACCCCAACAAAAACTCAAGGACTTGGAGCTGGCAAAGCAGCTGATCTGACCTATTGGGAGAGTGCTGCAAGGATGATCGCTGATGTTTCCAAATCTAACAAAATTGTAGTTGAGAAATCAACCGTTCCTGTGAAAACAGCTGAGGCAATTGAGAAGATCCTTACCCACAATAGGAAAGGCATCAATTTCACGATTCTTTCAAACCCAGAATTTCTTGCCGAGGGTACAGCAATTAAGGATCTCATGAGTCCTGATCGAGTCCTTATTGGAGGTAGGGAGACCCCAGAAGGTGCTAAGGCTATACAAGCTTTGAAAGATGTTTATGCCCATTGGGTCCCCGTAGACAAAATCCTCTGCACCAACTTGTGGTCTGCTGAACTCTCAAAACTGGCCGCCAATGCTTTTCTGGCACAAAGGATCTCTTCTGTGAATGCCATGTCAGCACTCTGTGAGGCTACTGGAGCTGATGTCACCCAGGTGTCGCACGCAATTGGCACAGACTCAAGAATTGGGCCCAAGTTCTTGAATTCAAGCGTTGGTTTTGGGGGATCTTGCTTTCAGAAGGATATTTTAAACTTGGTCTATATCTGTGAGTGCAATGGCCTTCCTGAGGTTGCAAATTACTGGAAACAGGTGATTAAGGTGAATGACTACCAGAAAACTCGATTTGTGAACCGAGTTGTTGCCTCCATGTTTAACACTGTATCAGGTAAGAAAATTGCTGTTCTGGGATTTGCTTTCAAGAAGGACACTGGGGATACAAGGGAGACACCAGCCATTGACGTGTGCAAGGGGCTATTGGGAGACAAGGCTCGTTTGAGCATATATGATCCACAGGTCACCGAAGATCAAATCACAAGGGATCTTTCAATGAATAAGTTTGACTGGGACCATCCTGCCCATCTTCAACCATCAAGCCCCACTTCCATTAAGACAGTGTCTGTGGTTTGGGATGCATATGAGGCAACAAAAGAGGCTCATGCTGTTTGCATTCTGACTGAGTGGGATGAGTTCAAGAAGCTTGATTACCAAAAAGTTTATGACAATATGCAGAAGCCTGCATTTATATTTGATGGTAGGAACATTGTGGACGTTGAGAAGATGAGGAAAATTGGGTTCATTGTTTACTCCATTGGCAAGCCTCTAGATTCATGGCTCAAGGACATGCCTGCAGTAGCATGA 1515 0.4528 MSWNLSFLKLTINSLLQAAEKKQKMVKICCIGAGYVGGPTMAVIALKCPEIQVSVVDIATARINAWNSDHLPIYEPGLEEVVKECRGRNLFFSTDVEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSNKIVVEKSTVPVKTAEAIEKILTHNRKGINFTILSNPEFLAEGTAIKDLMSPDRVLIGGRETPEGAKAIQALKDVYAHWVPVDKILCTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGTDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVASMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQITRDLSMNKFDWDHPAHLQPSSPTSIKTVSVVWDAYEATKEAHAVCILTEWDEFKKLDYQKVYDNMQKPAFIFDGRNIVDVEKMRKIGFIVYSIGKPLDSWLKDMPAVA 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0757 504 PIRSF UDPglc_GDPman_dh 26 491 IPR017476 GO:0016616
Lele53g0757 504 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 27 472 IPR017476 GO:0016616
Lele53g0757 504 FunFam UDP-glucose 6-dehydrogenase 24 232 - -
Lele53g0757 504 FunFam UDP-glucose 6-dehydrogenase 265 502 - -
Lele53g0757 504 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 25 502 IPR028356 GO:0003979
Lele53g0757 504 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 338 487 IPR036220 -
Lele53g0757 504 FunFam UDP-glucose 6-dehydrogenase 233 264 - -
Lele53g0757 504 Gene3D - 18 232 - -
Lele53g0757 504 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 234 328 IPR014026 GO:0016616|GO:0051287
Lele53g0757 504 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 352 475 IPR014027 GO:0016616|GO:0051287
Lele53g0757 504 PIRSF UDPglc_DH_euk 20 504 IPR028356 GO:0003979
Lele53g0757 504 SMART UDPG_MGDP_dh_C_a_2_a 352 476 IPR014027 GO:0016616|GO:0051287
Lele53g0757 504 Gene3D - 265 502 - -
Lele53g0757 504 Gene3D - 233 264 - -
Lele53g0757 504 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 27 210 IPR001732 GO:0016616|GO:0051287
Lele53g0757 504 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 27 224 IPR036291 -
Lele53g0757 504 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 234 333 IPR008927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0757 Lele-ChrLele53 17546618 17548235 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0757 53 17546618 17548235 Lele55g0732 55 4890476 4891918 hybridization
Lele53g0757 53 17546618 17548235 Lele56g0686 56 5131822 5138077 hybridization