Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0751 ATGGCGATCATTGCTCGGACGCGTTCTCTGATCAAAACGTTTCACCCTAAATACGCTAACACATCCGTGAAGACGATTACCACCTTCCCTTCCCTCTCTCAGGAGCCTCAACTCGCCGAATCAACGACACCGGCCGCCCCAACCCCACTTCCTCCCAACCCGGCCTCCGGTAGTCCTCTCTACAATGAGAATTGGCGCAGCCCAATTCCGCCTTCTGCAACCCAGTCAATAATCCCACTGGGGTTTCTTAATCTAGTACCCGGTCATCGCATCCAAACAATGGCACAGACATTTGATGCTAAGAGCTTGATGGATCAGTTTGCTGATTGGGTGGCCTCTCAGGAATGGGCTGCTATCAAAGAGTTGTTCGAGTCTTGGGTTAAGTCATTGAACAAGAGTGGGAAGCCGAATAAGCCTGATATAAATTTGTATAATCATTATCTGAGAGCGAACTTGATGATTGGTTATTCTGCTGGGGAGCTTCTAGATTTGTTAGCTGGAATGGAGGATTTTGGTGTCACACCTAATACTGCTTCGTTCAATTTGGTGCTTAAAGCAATGTACCGCGCCAAGGAGACTGAAGCTGCTGAGAAGTTGCTGGAACGGATGCTGCTGGCTGGAAATGAATCTCGCCCTGATAATGAATCATATGACTTGGTCATTGGAATGCTGTTTTTGACTGGCCAAATTGATGCTGCATTGAAGTATATAGACTTGGCTTTGAAATCAAGTTATATGTTGTCAATGAAAGTGTTTACTAACTGTGTAAATAGTTGTATCAAAAGGGGTAGGCTAGATACTTTGGCAGCAATAATTGAAAAGTGCAAGACAATGGATCAGAACAAGGCTCTTTGCCCTCCGTGGAATGTGTGCTACTTAATAGCTGAAACTGCAATGCAGCTGGATAATAGCAAACTAGCTTATTATGCACTGGAGTTTATGGCTATGTGGATTGCAAGGGGTGAGCAGGCAAGACCAGCTGCTTTACTTTCTGTAGACGAAGGTTTAGTTGTGTCAGCTCTAGCCACTGCAGGTAGGACCTATAGTACTAATCTGCTGGATGCAGCATGGTCTATTTTACGTCGCTCATTGCGTCAGAGAAAGGCTCCTAACCCTGAATCTTATCTCGGAAAGATAAGTGTCCTTGCATCAATGGGCAACTTACAAAGGGCTTTTAGTACGCTACATGACTTTGAGGTTGCTTATGGAGATTCCAGTGAAGAAGCTGAAGAAATGTTCTCTCCCTTTACTTCGTTACATCCATTGGTTGTGGCATGCTGCAAGAAGGGATTTGAGACTTTGGATTCTGTTTATTTTCAACTGGAAAGTTTGAGCGGAACAGAGACGCCTTATAAATCTGTGGCTGCTCTAAACTGCATCATTTTAGGGTGTGCAAACATATGGGACCTTGATCGTGCATACCAAACTTTTGAAGCAATTGGATCCTCTTTTGGATTGACACCTGATATTCATTCTTATAATGCACTGATGCATGCATTTGGGAAGCTCAAAAAGACACATGAAGCAACTAAGGTGTTTGAGCACGTAGTGAGCTCGGGTGTAAAGCCTAATGCAATGTCATATTCTCTGCTCGTGGATGCCCACCTCATGAACCGAAATGTCAAAGACGCTCTAACTGTAATTGATGATATGGTGGCGGCTGGATTTGAACCTACAAAAGAGATGCTAAAAAAGGTTCGAAGGCGATGCATGCGAGAGATGGACTATGACAGTGATGATAGAGTTCAGTCCTTCGCCAAATCTCTGAACATTCGAATGGGTCCAGAAGGCCGTCGGGACATGCTATTCAATCTTGATTACAGCATGGATTATGCTTAA 1839 0.4437 MAIIARTRSLIKTFHPKYANTSVKTITTFPSLSQEPQLAESTTPAAPTPLPPNPASGSPLYNENWRSPIPPSATQSIIPLGFLNLVPGHRIQTMAQTFDAKSLMDQFADWVASQEWAAIKELFESWVKSLNKSGKPNKPDINLYNHYLRANLMIGYSAGELLDLLAGMEDFGVTPNTASFNLVLKAMYRAKETEAAEKLLERMLLAGNESRPDNESYDLVIGMLFLTGQIDAALKYIDLALKSSYMLSMKVFTNCVNSCIKRGRLDTLAAIIEKCKTMDQNKALCPPWNVCYLIAETAMQLDNSKLAYYALEFMAMWIARGEQARPAALLSVDEGLVVSALATAGRTYSTNLLDAAWSILRRSLRQRKAPNPESYLGKISVLASMGNLQRAFSTLHDFEVAYGDSSEEAEEMFSPFTSLHPLVVACCKKGFETLDSVYFQLESLSGTETPYKSVAALNCIILGCANIWDLDRAYQTFEAIGSSFGLTPDIHSYNALMHAFGKLKKTHEATKVFEHVVSSGVKPNAMSYSLLVDAHLMNRNVKDALTVIDDMVAAGFEPTKEMLKKVRRRCMREMDYDSDDRVQSFAKSLNIRMGPEGRRDMLFNLDYSMDYA 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0751 612 Pfam Pentatricopeptide repeat domain 138 187 IPR002885 -
Lele53g0751 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Lele53g0751 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Lele53g0751 612 TIGRFAM PPR: pentatricopeptide repeat domain 527 559 IPR002885 -
Lele53g0751 612 TIGRFAM PPR: pentatricopeptide repeat domain 491 525 IPR002885 -
Lele53g0751 612 Gene3D Tetratricopeptide repeat domain 331 597 IPR011990 GO:0005515
Lele53g0751 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Lele53g0751 612 PANTHER OS07G0599000 PROTEIN 1 611 IPR044605 -
Lele53g0751 612 Gene3D Tetratricopeptide repeat domain 109 305 IPR011990 GO:0005515
Lele53g0751 612 MobiDBLite consensus disorder prediction 32 65 - -
Lele53g0751 612 Pfam PPR repeat family 488 534 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0751 Lele-ChrLele53 17496685 17499850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0751 472 578 Glycosyltransferase AT1G05670 27.103 1.24e-07 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0751 53 17496685 17499850 Lele55g0737 55 4936387 4939563 hybridization
Lele53g0751 53 17496685 17499850 Lele56g0691 56 5169321 5172802 hybridization