Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0729 ATGATTACATATTCATCTTTACTAATGGAATCTTGGAGTTATGCCTCAGAAGAGAAAAGCTATTTGTGTTCAGATGAAATGGATTTCTCTCTGGATGCTTATATGAGAAGTAGAAGAGCAATGGTTGAATGGGACAATAATAAAGCCTCTTATATCTTTGAGAAAGATGGGTTTATTTCAGATAAGGAGGTAATTAAAAGCGTTGAGTTTGTGGATTTGGGGTTTACTGATTTGTTCAGAAGGCCTGTTCATGGTAGCCAGCCACCACTGGAAACATCAAACTATGAACATGAAAGTCATTCTAGGGAGAAAGTTAATTCCTCTACTCATGTTATTGCTCTAAATTCACCTTTGGGAGAAGTAGAATCTGAGTCAAGGCATTCATGTTCTCTAGTTGAATCTAAGATTCATGATTCTTCACTGATTGATTTAAAGCTAGGGAGATTAGGAGATTGTAAAGATTCGAGCAGTGATAAAAATGACAATGAGGGGTTCACTTTTCAACCAATGTATCCAGCGTCCGTGCTTACGAAGAGAGCTCGAATTTCTAGTTTACCTAGTCAAACACCTGTTTGTCAAGTTTATGGTTGTAACAAGGATCTTAGCTCCTCAAAAGAGTACCACAAAAGGCACAAAGTTTGTGATGTTCATTCCAAGACAGCCAAAGTTATTGTTAATGGCATTGAACAAAGGTTTTGTCAGCAGTGCAGCAGGTTCCATCTGCTAGCTGAATTTGATGATGGCAAGCGCAGTTGTCGTAGACGCCTAGCTGGACACAATGAACGTCGGAGGAAGCCTCAGTTTGATTACATCTCTGGTAAACCACAGAAGATACTACAGTCATGTCAAGGTACCAAATATTTTGGGGCTTCATTACAGAAGAGACCCCAGTTTGCCTTTCACGACGTGTTTCAAGGTGGTGTTTTTAACTCGGGAAAGTATGAACAAAGAAATCATCAGATTGGTCACATCAAATTTGAAGATGAATCAATTTACAGTTCTCAATTAGCAAATTGTCAAGAGTTATCCAGGGCCTCCAACTCCAGAAGTTGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGGATCTAACAACACGCTGCTCGGCTGGTTCCCTTATTTGTCAAGGCATCTGCACACAGCACAGTGATGGCCAAGTTTCTGAAATACCTTTTGGGATTAGCTCTCTGGATAAATTTGTCCCAAGTCAGTCCTTTTCATGTGAGATAAACTCCATGGAAGTTACCAAGAACAGACCCATAATGCCTTCTGATGTTGGTAATGCTGTTCAACCTGAAGTCCATGGAGATGATGATACTTACAAACCATCAGATTTGTTAAATGCCAAATATCGTCATCCTCCTGTCGGACATAGCTCCACCGTGGATCTGTTCCAATTGTCATCACATCTTCAAAGGGTGGAACGACAGAGAAATTCTGTTCAAGTGAAGCATGAAAATGAGGACGGCTGCTTTTTTCCAACCATGTGA 1488 0.4046 MITYSSLLMESWSYASEEKSYLCSDEMDFSLDAYMRSRRAMVEWDNNKASYIFEKDGFISDKEVIKSVEFVDLGFTDLFRRPVHGSQPPLETSNYEHESHSREKVNSSTHVIALNSPLGEVESESRHSCSLVESKIHDSSLIDLKLGRLGDCKDSSSDKNDNEGFTFQPMYPASVLTKRARISSLPSQTPVCQVYGCNKDLSSSKEYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYISGKPQKILQSCQGTKYFGASLQKRPQFAFHDVFQGGVFNSGKYEQRNHQIGHIKFEDESIYSSQLANCQELSRASNSRSCALSLLSAQSQDLTTRCSAGSLICQGICTQHSDGQVSEIPFGISSLDKFVPSQSFSCEINSMEVTKNRPIMPSDVGNAVQPEVHGDDDTYKPSDLLNAKYRHPPVGHSSTVDLFQLSSHLQRVERQRNSVQVKHENEDGCFFPTM 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0729 495 SUPERFAMILY SBT domain 190 271 IPR036893 GO:0003677|GO:0005634
Lele53g0729 495 Pfam SBP domain 192 265 IPR004333 GO:0003677
Lele53g0729 495 Gene3D - 183 253 IPR036893 GO:0003677|GO:0005634
Lele53g0729 495 ProSiteProfiles Zinc finger SBP-type profile. 189 266 IPR004333 GO:0003677
Lele53g0729 495 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 148 370 IPR044817 GO:0003677
Lele53g0729 495 FunFam Squamosa promoter-binding-like protein 14 183 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0729 Lele-ChrLele53 17345603 17349494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0729 142 493 SBP-box Gene Family AT1G69170 37.166 2.88e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele53g0729 SBP 3.2e-31 No_clan