Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0661 ATGTTTCAAACATCGTGAACATCGTGGTTGGTGGACAAAAGTAGAATAGCAACCAAAATAAAGAGTGCTTCTGGCGCATTTGATCCTGAGAAGGTTAAATGGAAAAGCGATCCTACCATAGCTTGCCCGAATTGTCAGCACATTATCGATAACAGCGATGTAACACAAGAATGGCCTGGATTGCCAAAGGGCGTGAAATTCGATCCATCAGACCAAGATATAATATGTCACTTGCTTGCTAAAGTTGGTGTGGTGAATTCAAGACCGCATACTTTCATTGATGAATTTATCACTACTCTTGAAGTGGATGATGGAATTTGTTATACTCATCCGAAACATTTACCAGGTGTTAATCAAGATGGAAGTGCAACCCACTTCTTCCATAGAGCAATCAAGGCTTACAATACTGGCAATCGAAAGCGTAGAAAAATACACGGTCAGGATTCTGGGGATGTTCGCTGGCACAAGACCGGAAGAACTAAACCCATCATGTTGGATGGGGTTCAGAAGGGCTGTAAAAAGATTATGGTTCTTTATATGACCATGGTTAAAGGCGGTAAAGCCGAGAAAACTAATTGGGTTATGCATCAATATCACCTAGGAACACAAGAGGATGAAAAGGAAGGAGAGTATGTTGTCTCTAAAGTTTTTTACCAGCAGCAGCAACAGGTCAAATCAGGGGATAAGGATGACCTGGATATTCCTGCCAGCACCATGGATATTCCTGAAAGTACCAAAAACATTGGAGCATCGACTGTGCAAGTTGATCCGGTCACCCCCAAGTCAGTGACCCCTGATCCACCTTGTAACAAAAGGCCACATTCAAACGTTGATGTGGGACTAGAATCGCATTCTATTCCTCAGCATCCTTCAATGGATTGTGTAGAAGATGCGCCTCGAGCAGGTTGTGAAGAGCCAAAAACTGATATACTCAAGGAAGAAAATGAAAACAGTAATGAAGGAATGGATAATAATGAAAACGATGATGATAATGAAGAACCTAAATGGTGGGATAGTGAGTCACAGAATCTGTTGAATTCGCAACAACTCGTTGAAGCATTGTCCTTGTGTGAGGACCTCTTTCACAGTCAATCTCCCAATAGAGATGACAAAAGCGAACAACACAAGGACCAACCCGTTCTTTCTGTATATGCTCAACTTGGACCAGAGCATCTGAAAAAGGACCTTGAAGAGTGCCAAAATCTTGCAAATATAGAACTCGATACACCTCCTGAGTTTCGACTAAGTCAGCTGGAGTTTGGCTCGCAAGATAGCTACACTGCCTGGGGTGGCAGCATGGCAGAGAACTGA 1311 0.4272 MFQTSXTSWLVDKSRIATKIKSASGAFDPEKVKWKSDPTIACPNCQHIIDNSDVTQEWPGLPKGVKFDPSDQDIICHLLAKVGVVNSRPHTFIDEFITTLEVDDGICYTHPKHLPGVNQDGSATHFFHRAIKAYNTGNRKRRKIHGQDSGDVRWHKTGRTKPIMLDGVQKGCKKIMVLYMTMVKGGKAEKTNWVMHQYHLGTQEDEKEGEYVVSKVFYQQQQQVKSGDKDDLDIPASTMDIPESTKNIGASTVQVDPVTPKSVTPDPPCNKRPHSNVDVGLESHSIPQHPSMDCVEDAPRAGCEEPKTDILKEENENSNEGMDNNENDDDNEEPKWWDSESQNLLNSQQLVEALSLCEDLFHSQSPNRDDKSEQHKDQPVLSVYAQLGPEHLKKDLEECQNLANIELDTPPEFRLSQLEFGSQDSYTAWGGSMAEN 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0661 436 Gene3D NAC domain 70 224 IPR036093 GO:0003677|GO:0006355
Lele53g0661 436 MobiDBLite consensus disorder prediction 298 319 - -
Lele53g0661 436 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 7 400 IPR044799 GO:0003700
Lele53g0661 436 MobiDBLite consensus disorder prediction 320 335 - -
Lele53g0661 436 FunFam NAC domain-containing protein 8 70 223 - -
Lele53g0661 436 SUPERFAMILY NAC domain 46 219 IPR036093 GO:0003677|GO:0006355
Lele53g0661 436 ProSiteProfiles NAC domain profile. 61 219 IPR003441 GO:0003677|GO:0006355
Lele53g0661 436 MobiDBLite consensus disorder prediction 224 344 - -
Lele53g0661 436 Pfam No apical meristem (NAM) protein 62 200 IPR003441 GO:0003677|GO:0006355
Lele53g0661 436 MobiDBLite consensus disorder prediction 240 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0661 Lele-ChrLele53 16781100 16785261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0661 8 221 NAC Transcription Factor Family AT4G28500 50.909 4.48e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele53g0661 NAM 1.1e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0661 53 16781100 16785261 Lele55g0829 55 5661729 5665581 hybridization
Lele53g0661 53 16781100 16785261 Lele56g0769 56 5829024 5833791 hybridization