Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0657 ATGGATGCGAGTAGTTCCGCAGATGAAAGCACTTCGAGTGATTCGGTCTCCATATCGCTTTCTCCGGCGATAACTGTATCTCCGATTACGAACATGACGCTTCAGAAGTCATCGCCGCCGTGTCCCAATAGTCTCTTCCCTGTTGGCAGCGGTGCTAGTACTATTGTGGATTCCGATGGCGGTGTTGAGGCTGAGTCCCGGAAGCTGCCGTCGTCGAAATACAAGGGAGTGGTGCCGCAGCCCAATGGACGATGGGGGGCCCAGATATATGAGAAGCACCAGCGTGTTTGGCTAGGCACGTTCAACGAGGAAGATGAAGCCGCCAGGGCGTACGATATCGCCGCCCAGAGGTTCCGCGGCAAGGACGCCGTCACCAACTTCAAGCCCCTCAACGGAAATAACTCAGCTGTTGATGCGTCCGATGACGATATCGTGACGGAGTTCCTTAACTCGCATTCCAAAGCCGAGATCGTGGACATGCTGAGGAAGCACACCTACAATGACGAACTCGAGCAGAGCAAGCGCAACGGCGGGTTGGCCCGAGGGAGCAACGGCAAGTCACGGCGGGACGGCGGAGCAGGGTCGTGGTTTGAGCGGTCACAGAAAGCGCGCGAGCAGCTGTTCGATAAAACCGTCACGCCAAGCGACGTGGGGAAGCTGAATCGATTGGTGATACCCAAGCAGCACGCCGAGAGGCACTTCCCGTTACAGAGCGGAGGCGCTGCTTCTTGCTCGACGGCGGCGGCGGTGGCGAAGGGGTTGCTTCTGAATTTCGAGGATGATGGAGGAAAAGTGTGGAGGTTTCGGTACTCGTATTGGAATAGTAGCCAGAGCTACGTGCTAACAAAAGGATGGAGCAGGTTCGTGAAGGAGAAGAACCTGAAAGCCGGCGATACGGTCAGTTTCCTCAGGTCAACCGGACCGGATCGGCAGCTCTACATTGACTGGAAAGACAGAAGTAACCAGGGAGGAGTCGGTGGTGAAGGGACCGGAATGGAGGGGTTGTACAACCCGGTAGGACCGGTGGTGGAGCCGATTCAGATGGTACGGCTCTTTGGGGTGAACATTTTGAAAATGCCGCCGTCGGATTTCGTAGGTGGAAGCTGCCACGGCAAGAGGAAAGAGATGGATCTGTTGACGTTAGAGTTTAGCAAGAAGCCAAAGATAGTTGGAGCTATGTAA 1182 0.555 MDASSSADESTSSDSVSISLSPAITVSPITNMTLQKSSPPCPNSLFPVGSGASTIVDSDGGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLNGNNSAVDASDDDIVTEFLNSHSKAEIVDMLRKHTYNDELEQSKRNGGLARGSNGKSRRDGGAGSWFERSQKAREQLFDKTVTPSDVGKLNRLVIPKQHAERHFPLQSGGAASCSTAAAVAKGLLLNFEDDGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVSFLRSTGPDRQLYIDWKDRSNQGGVGGEGTGMEGLYNPVGPVVEPIQMVRLFGVNILKMPPSDFVGGSCHGKRKEMDLLTLEFSKKPKIVGAM 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0657 393 SMART rav1_2 73 134 IPR001471 GO:0003700|GO:0006355
Lele53g0657 393 CDD B3_DNA 207 302 IPR003340 GO:0003677
Lele53g0657 393 ProSiteProfiles AP2/ERF domain profile. 73 128 IPR001471 GO:0003700|GO:0006355
Lele53g0657 393 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 68 367 IPR044800 GO:0003700
Lele53g0657 393 MobiDBLite consensus disorder prediction 168 196 - -
Lele53g0657 393 MobiDBLite consensus disorder prediction 31 51 - -
Lele53g0657 393 Gene3D AP2/ERF domain 72 129 IPR036955 GO:0003700|GO:0006355
Lele53g0657 393 Gene3D - 197 326 IPR015300 -
Lele53g0657 393 CDD AP2 72 127 IPR001471 GO:0003700|GO:0006355
Lele53g0657 393 SUPERFAMILY DNA-binding domain 72 128 IPR016177 GO:0003677
Lele53g0657 393 SUPERFAMILY DNA-binding pseudobarrel domain 206 319 IPR015300 -
Lele53g0657 393 Pfam AP2 domain 72 120 IPR001471 GO:0003700|GO:0006355
Lele53g0657 393 ProSiteProfiles B3 DNA-binding domain profile. 208 320 IPR003340 GO:0003677
Lele53g0657 393 SMART B3_2 208 320 IPR003340 GO:0003677
Lele53g0657 393 FunFam AP2 domain-containing protein RAP2.8 72 129 - -
Lele53g0657 393 MobiDBLite consensus disorder prediction 31 52 - -
Lele53g0657 393 Pfam B3 DNA binding domain 208 319 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0657 Lele-ChrLele53 16726570 16727751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0657 1 393 B3 DNA Binding Superfamily AT1G25560 57.072 8.19e-139 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Lele53g0657 B3 6.1e-27 CL0405