Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0654 ATGCGGCCCCACGTGATGAAGGGGTTCTCCGATTACATTCAAGCATTAGAATCTGAACGCCGTAAAATCCACGTCTTCTCCAAAGAGCTTCCTCTTTCCTTGGAACTCGTTACCCAAGCCATCGAAGCCTTTAGGCCACAGTTATGTGGAAGGACGACGACGACCTCGGAGGAGCAGAATTTGAACCGGCAATCGGAGTGTTCATCAGGACAGACATCATCGGAAGGACCTGTTTTGGAGGAGTTCATACCTATAAAGAAAAGAGCATCCTCGGATTGCGGGGAAGAGGACGATGAAGTAGATGAGCAACACTCGCATAAACCCAAGGTTGCCAAGGATAATCATAAGAACACAGATAAGAAAAAATCGGACTGGCTTAGACCCGTACAACTCTGGAATCCACAATCCCCAGTTCAAGAGGATATTCCTCGGAAAACGTCTGCGTGGGAAGTAAACAAAGACGGAGGTGCTTTCCGGCCACTCCACGGAGAGGCAAATGTTGGAGAGACTACTGCATTAACGGCGTCCAAAGCATCCTCTTTGCCTGCGCCTGCTCCTCCAGTCGCCGGAAACAACAAGAGAGAAGAGAAAGAAGGAAATAATAAAAGCAATAAGCAACGACGATGCTGGTCTCAGGAGCTGCATAAGCGCTTCGTGAACGCCCTTCACCAACTTGGTGGAGCAGATTCTGCAACACCGAAGCAGATAAGGGAACTTATGAAGGTTGATGGCCTAACAAATGATGAAGTGAAGAGTCATTTACAGAAATTTCGATTGCACACAAGGAGGTCAAGTCCATTGATTCAGAACAATGGCGATTCCCGAACGGCTCCATTTGTAATCGTGGGGAACTTTATCGTGCAACCGCCGGAACATGCAGCGGTGGTTCCGATGAAGGGTAAGGGGAGGCAATTACGTTCAAATTCAGAAGGCAGCGAAGTGGCGGATCATTCAAATTCACCAACTTCCCTCTTCCTACACCCATACCACTACAGCTTGCCCCTCGCTATTCAATTAGGAGATGCTATTCCATAA 1035 0.4812 MRPHVMKGFSDYIQALESERRKIHVFSKELPLSLELVTQAIEAFRPQLCGRTTTTSEEQNLNRQSECSSGQTSSEGPVLEEFIPIKKRASSDCGEEDDEVDEQHSHKPKVAKDNHKNTDKKKSDWLRPVQLWNPQSPVQEDIPRKTSAWEVNKDGGAFRPLHGEANVGETTALTASKASSLPAPAPPVAGNNKREEKEGNNKSNKQRRCWSQELHKRFVNALHQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSSPLIQNNGDSRTAPFVIVGNFIVQPPEHAAVVPMKGKGRQLRSNSEGSEVADHSNSPTSLFLHPYHYSLPLAIQLGDAIP 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0654 344 SUPERFAMILY Homeodomain-like 204 263 IPR009057 -
Lele53g0654 344 MobiDBLite consensus disorder prediction 174 208 - -
Lele53g0654 344 MobiDBLite consensus disorder prediction 53 144 - -
Lele53g0654 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 262 IPR017930 -
Lele53g0654 344 Gene3D - 204 262 - -
Lele53g0654 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 316 IPR044787 GO:0003700|GO:0006355
Lele53g0654 344 MobiDBLite consensus disorder prediction 81 126 - -
Lele53g0654 344 FunFam Myb family transcription factor 204 262 - -
Lele53g0654 344 MobiDBLite consensus disorder prediction 53 76 - -
Lele53g0654 344 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 260 IPR006447 GO:0003677
Lele53g0654 344 MobiDBLite consensus disorder prediction 305 319 - -
Lele53g0654 344 MobiDBLite consensus disorder prediction 299 319 - -
Lele53g0654 344 Pfam Myb-like DNA-binding domain 207 256 IPR001005 -
Lele53g0654 344 MobiDBLite consensus disorder prediction 191 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0654 Lele-ChrLele53 16694767 16696251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0654 6 287 G2-like Transcription Factor Family AT1G68670 47.213 3.54e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele53g0654 Myb_DNA-binding 7.1e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0654 53 16694767 16696251 Lele55g0835 55 5742554 5744033 hybridization
Lele53g0654 53 16694767 16696251 Lele56g0777 56 5918103 5919596 hybridization