Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0641 ATGAAGATATTCGTCAAGACTCTCAAGGGCACCAGCTTCGAAATCGAAGTCAAGCCTGAGGATACGGTTTCTGAAGTGAAGAAACATATAGAAACTGTCCAGGGTGCATCTGTATATCCTGCTGCACAGCAAATGCTTATTTATCAAGGGAAAGTTCTCAAAGATGGTACTACCTTGGAGGAAAGTACAGTAGTTGAAAACAGTTTTGTTGTAATCATGCTATCAAAGAGTAAGAGCTCATCGGGCGAGGGATCTACTACTGCATCTTCAGTTAAGGCCCCTCAGACTAGTTCAGCTCCTACGCCAGCTCCTTCGTCAACAGCACCTCAAGCACCTGCTCCAGCTGGGGCATTGCCTGTACCTGTTACTTCGCCTGCACCTTTGCCTTCACCAGCTCCAGCAGCTCCAGCTCCAGCTCCAGCTGCTGCCGTGTCAGGGTCTGATGTCTATGAGCAGGCAGCATCTAATCTTGTTGCTGGGAACAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGTGGAGGTAGCTGGGATAGGGATACTGTTGTCCGAGCTCTTCGTGCTGCTTACAACAACCCTGAGAGAGCTGTTGAATACTTGTATACGGGTATCCCAGAGCAAGCTGAAGCTCCCCCTGTGGCTCCTGCGCCTGCAAGTGGTGCCCAAACTGGAAATGTTCCATCTGCAGCTCCACAAGCAGCACAACCTGCACCTGTTCCTTCTAGTGGGCCTAATGCTAATCCTTTAGATCTCTTTCCTCAGGGCCTCCCAAATGTTGGTGCTGGTGCAGCTGGTGCAGGCAATCTAGATTTTCTGCGCAACAGTCAACAGTTTCAAGCATTGCGAGCCATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCTCATCTAATGAGATTGATTCAAGACCATCAAGCTGACTTCCTCCGCCTGATAAATGAACCTGTGGAAGGTGGTGAGGGGAATATATTGGGGCAGCTGGCCAATGCCATGCCGCAAACAATAGCTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGATTCGATCGGGCGCTTGTTTTGGAGGTGTACTTTGCTTGTAACAAAAATGAAGAATTGGCTGCTAACTACCTCTTGGATCACATGCATGAGTTTGAGGAATGA 1188 0.4865 MKIFVKTLKGTSFEIEVKPEDTVSEVKKHIETVQGASVYPAAQQMLIYQGKVLKDGTTLEESTVVENSFVVIMLSKSKSSSGEGSTTASSVKAPQTSSAPTPAPSSTAPQAPAPAGALPVPVTSPAPLPSPAPAAPAPAPAAAVSGSDVYEQAASNLVAGNNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVAPAPASGAQTGNVPSAAPQAAQPAPVPSSGPNANPLDLFPQGLPNVGAGAAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQADFLRLINEPVEGGEGNILGQLANAMPQTIAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0641 395 Gene3D - 261 326 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele53g0641 395 Pfam XPC-binding domain 270 325 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lele53g0641 395 Gene3D - 156 206 - -
Lele53g0641 395 MobiDBLite consensus disorder prediction 76 104 - -
Lele53g0641 395 Gene3D - 343 390 - -
Lele53g0641 395 Gene3D - 1 80 - -
Lele53g0641 395 FunFam UV excision repair protein RAD23 B 261 326 - -
Lele53g0641 395 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 161 204 IPR015940 -
Lele53g0641 395 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lele53g0641 395 PRINTS DNA repair protein Rad23 signature 296 318 IPR004806 GO:0006289
Lele53g0641 395 PRINTS DNA repair protein Rad23 signature 377 392 IPR004806 GO:0006289
Lele53g0641 395 PRINTS DNA repair protein Rad23 signature 345 361 IPR004806 GO:0006289
Lele53g0641 395 PRINTS DNA repair protein Rad23 signature 362 376 IPR004806 GO:0006289
Lele53g0641 395 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 348 389 IPR015940 -
Lele53g0641 395 FunFam UV excision repair protein RAD23 1 80 - -
Lele53g0641 395 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 384 - -
Lele53g0641 395 SUPERFAMILY XPC-binding domain 266 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele53g0641 395 MobiDBLite consensus disorder prediction 105 138 - -
Lele53g0641 395 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lele53g0641 395 CDD Ubl_Rad23 1 74 - -
Lele53g0641 395 SUPERFAMILY UBA-like 160 213 IPR009060 GO:0005515
Lele53g0641 395 SMART CBM 268 311 IPR006636 -
Lele53g0641 395 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Lele53g0641 395 SMART uba_6 163 203 IPR015940 -
Lele53g0641 395 SMART uba_6 351 388 IPR015940 -
Lele53g0641 395 FunFam UV excision repair protein RAD23 homolog 156 206 - -
Lele53g0641 395 TIGRFAM rad23: UV excision repair protein Rad23 1 394 IPR004806 GO:0006289
Lele53g0641 395 SUPERFAMILY UBA-like 332 393 IPR009060 GO:0005515
Lele53g0641 395 MobiDBLite consensus disorder prediction 76 141 - -
Lele53g0641 395 CDD UBA1_Rad23_plant 157 206 - -
Lele53g0641 395 MobiDBLite consensus disorder prediction 211 247 - -
Lele53g0641 395 SMART ubq_7 1 75 IPR000626 GO:0005515
Lele53g0641 395 Pfam UBA/TS-N domain 351 386 IPR015940 -
Lele53g0641 395 Pfam UBA/TS-N domain 166 201 IPR015940 -
Lele53g0641 395 FunFam UV excision repair protein RAD23 homolog 342 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0641 Lele-ChrLele53 16588420 16593704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0641 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 2.16e-10 56.6