LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele53g0618	ATGTCTGCTATAACAAAGAGAGATATTAAGATGTGTTCTAAAGAAGAAGAAGGTGAAATGAGAAGAGGCCCTTGGACTCTTGAAGAAGACAGCCTCCTCATTCACTATATCGCTCGCCATGGCGAAGGTCGCTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGAACGGAAAGAGTTGCAGGCTGAGATGGCTGAATTACTTGAAACCAGATATCAAGAGAGGAAACCTTACCCCACAAGAACAGCTTTTGATCCTAGATCTTCATTCTAGGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTTCCAGGAAGAACTGACAATGAGATCAAGAACTATTGGAGAACCAGAGTTCAGAAACAAGCTCGCCAACTTAACATTGAATCTGGAAGCAAGAAATTCATAGATGCAATTCGGTGTTTCTGGATTCCAAGATTAGTTCAAAAATCTGAACAGAAACAGAGCTCTCCTTCAACAACCTCGTACTCTTCTCTAACAGACACGAACCTTCATGTTTCTTCTTCAGCATTATCTTCTCCAATGTTGTCAACCAACAACTCTGTTATACCTTATTCTCTGTCTTGTTCAACATCATCATCATCTTTCCAACAGGCTACTGCAAATTTTCCCAGCAGTTTCTGCTCCAATAATCCCAGCAATTTTGCATCTGCAGATTCCTGGCAATTCTTGCAGCAGCAGATTCTGGAACCTTCTTCTTCAGAACTTCCAGCAAGTCCTTCCTGTTACATGTTAGAGAACAATAATAATGCTTGTTACAGCAACCCAATTCAGGAGAACTTGTTGGTGATGAACAATATTATGGAAACTACTTCTTCTGGGTATGGAATGGATAATAATAATCTGATGAACCTGCAGCAAGAACCAGCGACGACTACAATGATGGAAACGTACGACGACATGTTGCCGTTTGATTATTATCATTATCATCAGCCAACTATAGCAGAAAGTGACTGGACGACGTTAGGAAACATGGCAGATACTTTATGGAACATGGAAGCTCTGTGA	1032	0.4109	MSAITKRDIKMCSKEEEGEMRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRNGKSCRLRWLNYLKPDIKRGNLTPQEQLLILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKKFIDAIRCFWIPRLVQKSEQKQSSPSTTSYSSLTDTNLHVSSSALSSPMLSTNNSVIPYSLSCSTSSSSFQQATANFPSSFCSNNPSNFASADSWQFLQQQILEPSSSELPASPSCYMLENNNNACYSNPIQENLLVMNNIMETTSSGYGMDNNNLMNLQQEPATTTMMETYDDMLPFDYYHYHQPTIAESDWTTLGNMADTLWNMEAL	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele53g0618	343	Pfam	Myb-like DNA-binding domain	75	118	IPR001005	-
	Lele53g0618	343	Pfam	Myb-like DNA-binding domain	22	69	IPR001005	-
	Lele53g0618	343	FunFam	Myb transcription factor	22	74	-	-
	Lele53g0618	343	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	70	124	IPR017930	-
	Lele53g0618	343	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	21	69	IPR017930	-
	Lele53g0618	343	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	16	206	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Lele53g0618	343	SMART	sant	21	71	IPR001005	-
	Lele53g0618	343	SMART	sant	74	122	IPR001005	-
	Lele53g0618	343	ProSitePatterns	Phosphoglycerate mutase family phosphohistidine signature.	37	46	IPR001345	GO:0003824
	Lele53g0618	343	ProSiteProfiles	Myb-like domain profile.	70	120	IPR001005	-
	Lele53g0618	343	FunFam	MYB transcription factor	79	142	-	-
	Lele53g0618	343	Gene3D	-	78	120	-	-
	Lele53g0618	343	ProSiteProfiles	Myb-like domain profile.	17	69	IPR001005	-
	Lele53g0618	343	CDD	SANT	79	118	IPR001005	-
	Lele53g0618	343	CDD	SANT	24	69	IPR001005	-
	Lele53g0618	343	Gene3D	-	22	74	-	-
	Lele53g0618	343	SUPERFAMILY	Homeodomain-like	20	116	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele53g0618	Lele-ChrLele53	16361808	16363105	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele53g0618	19	161	MYB Transcription Factor Family	AT1G68320	79.720	7.19e-84	254

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele53g0618		Myb_DNA-binding	6e-14	CL0123