Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0534 ATGAGGAAACCTTTCGGTGATAATAAGGTGGTTTTGAACAGAGGAGCTTGGTCTAAACAAGAAGATCAGAAACTCATTGATTACATCAAGAAACATGGCGATGGTTGCTGGCGTACCCTCCCTCAAGCTGCTGGGTTACTTCACTGCGGCACAAGTTGTAGGCTGAGATGGATAAACTATCTGAGGCCAAACATTAAAAGGGGAAACTTTGCTAAAGATGAAGAAGATCTCATTATCAAGCTTCATGCCCTCCTAGGCAACCGGTGGTCCCTGATAGCTGGAAGATTACCGGGGAGGACAGACAATGAGGTGAAGAACTATTGGAACTATCACCTGAGAAAAAAGCTCATAAACGTGGGAATTGATCCGAATAACCATCGGTTAACTCGAAATCTACCATTAATGTCTGGAAGCTCAGCATCATCATACAACAGCCTGGAATACGAAGAGGATGATAACAACAACAACAACCACTATAACAATAGCGCCAAGAATGATGACGAGGACCCAAATAAAAAACCTTACGCTGATGATAAAAACTCTAATTGTGATCAAGTACTCTCAGATGCAGCAAGTGGTTTAGATGAAGAAGAATCGTTTTGCATACCGGATTTGAACCTCGACCTCAATATGAACAGGAGCAGTGATGAAATTATCTCTTCTTCTTCACCTCCTCCAGATCCAAAGCCAATTCATGAATATTCTAGAACTTGA 714 0.4188 MRKPFGDNKVVLNRGAWSKQEDQKLIDYIKKHGDGCWRTLPQAAGLLHCGTSCRLRWINYLRPNIKRGNFAKDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNYHLRKKLINVGIDPNNHRLTRNLPLMSGSSASSYNSLEYEEDDNNNNNHYNNSAKNDDEDPNKKPYADDKNSNCDQVLSDAASGLDEEESFCIPDLNLDLNMNRSSDEIISSSSPPPDPKPIHEYSRT 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0534 237 MobiDBLite consensus disorder prediction 162 179 - -
Lele53g0534 237 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele53g0534 237 MobiDBLite consensus disorder prediction 130 184 - -
Lele53g0534 237 MobiDBLite consensus disorder prediction 213 237 - -
Lele53g0534 237 Gene3D - 69 133 - -
Lele53g0534 237 FunFam MYB transcription factor 68 129 - -
Lele53g0534 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele53g0534 237 FunFam MYB-related transcription factor 13 66 - -
Lele53g0534 237 Gene3D - 14 66 - -
Lele53g0534 237 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Lele53g0534 237 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele53g0534 237 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele53g0534 237 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lele53g0534 237 SMART sant 66 114 IPR001005 -
Lele53g0534 237 SMART sant 13 63 IPR001005 -
Lele53g0534 237 CDD SANT 16 61 IPR001005 -
Lele53g0534 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele53g0534 237 MobiDBLite consensus disorder prediction 130 161 - -
Lele53g0534 237 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 196 - -
Lele53g0534 237 CDD SANT 69 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0534 Lele-ChrLele53 15260761 15261907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0534 9 216 MYB Transcription Factor Family AT4G38620 49.519 2.19e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele53g0534 Myb_DNA-binding 1.9e-13 CL0123