Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0533 ATGGCCGGCGGAGCTGCCAGGGCTGTTACCGGAGATCGAACTCCGGAGCTTATTGGTCTAGTTCATGACATTGTTGAAATGTGCGGTGGAGTTGGGGGATCCTCTTCTCCTACTGCCATTGACGCCGATGCTATGTTCAAGAAGGATTGCACCGATCTGGTTCGTCGGATCTCTTTACTTACATATTTGTTCGAGGAGATTAGGGACTCGAAGGAGGCCGTCATTGATTCTGGAAATTCTGATGCTTCTACTTCGTCTACTGGTTCTGCATCTTCGTGGTCCTCTGATCTTGTGCTCGCTCTCCATTCAGTAAAGCGCCTTATTTCAGTCGCCAGGAACTTCCGTTCTAATTCATCTTCTGATGGAGCTGCCAAGACAATTGTATTCCAATTTCAGTGTGTGACATGGAAATTGGAAAACCTATTAAGCATTCTACCCTATGATGATCTCGATGTATCAGAGGAAGTCAGGGAACAGGTGGAGTTGGTCAGAACACAATTGAGACGAGCCACTGAAAAATATGAATTTATGATTTCAAAGCTGTCATCTTATGACTTATCTCAGCCAATGGCTCTAGAAATTAGTCACAATCTTGGTAGATCAGTGAATGGATTGCATAAACAGCATAGCTGCCCTGATCATTTATCAGATCTAGATAGCATTGCTAGAAGCAATGGATGGACAAGTTGCAGCTCTAATCAGACAAGCCCTCGCTTGGAAAGGGCACAGAGCATTCCTGCATCATCTGAGGTTTCATTATCAAATCTTGTTGATCCTGAAGGTGAAGAAAATTCTGTGAAAAAGAATCTGACTGATGTGAAAAAGCCTGAGGCAATTCGTATTCCTGAAGATTATCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTAGCCACAGGTCAGACATATGAGAGATCTTACATCCAGAGATGGATAGATGGGGGAAATACAACATGTCCAAAAACTCAGCAGAAGCTCCAACATTTGACACTTACACCAAACTATGTGTTAAGGAGCCTTATAACTCAGTGGTGTATGGAGCATAATATTGAGCAGCCAACAGGACTTACAAATGGCAAGATAAAAAAGAGTGATGGATCATTCAGAGATGTTACGGGTGACATGGAAGCCATTGGAGCTCTTGTCCAGAAACTCTCTAGCCACAACATCGAGGAGCGTAGAGCGGCTGTTGCTGAAATTCGATCACTTTCCAAACGAAGTACAGATAACAGAATACTAATTGCTGAAGCAGGAGCAATCCCAATTCTTGTTAACCTTTTAACATCAGAAGATGTGTTGACTCAAGAAAATGCTGTTACTTCCATTCTCAACCTCTCTATCTACGAGAACAACAAAGGACTTATAATGCTTGCTGGTACCATCCCTTCCATTGTCCAAATCCTAAGAGCTGGAAGTATGGAAGCAAGAGAAAACGCAGCAGCAACCCTCTTTAGCTTGTCACTTGCAGATGAGAACAAAATAATTATCGGTGCCTCCGGAGCTATCCTCGCTTTGGTAGAATTGCTCCAAAATGGGAGCCCTAGAGGGAAGAAGGATGCCGCAACCGCATTATTCAACTTATGCATATATCAAGGAAACAAAGGCAGGGCCATAAGGGCAGGGATAATTACAGCATTGTTGAAGATGCTTACAGATTCAAGCAAATCTATGGTCGACGAAGCTTTGACGATAATGTCGGTTCTTGCCGGCCACCAAGAAGCAAAAATTGCTATTGTAAAGGCCAGCACTATACCTGTTCTTATCGATCTATTGAGGACCGGATTTCCTCGAAACAAGGAAAACGCAGCCGCCATTTTACTGGCCTTGTGTAAGAGGGATCCCGAAAATCTGGCGTGTATAAGCAGACTTGGTGTTATCATACCTTTGACAGAACTTGCTCGGAGTGGCACAGAGAGGGCCAAAAGGAAGGCTACTTCACTATTAGAGCATCTTCGTAAGTTACAACATATTTGA 1983 0.4347 MAGGAARAVTGDRTPELIGLVHDIVEMCGGVGGSSSPTAIDADAMFKKDCTDLVRRISLLTYLFEEIRDSKEAVIDSGNSDASTSSTGSASSWSSDLVLALHSVKRLISVARNFRSNSSSDGAAKTIVFQFQCVTWKLENLLSILPYDDLDVSEEVREQVELVRTQLRRATEKYEFMISKLSSYDLSQPMALEISHNLGRSVNGLHKQHSCPDHLSDLDSIARSNGWTSCSSNQTSPRLERAQSIPASSEVSLSNLVDPEGEENSVKKNLTDVKKPEAIRIPEDYLCPISLELMRDPVIVATGQTYERSYIQRWIDGGNTTCPKTQQKLQHLTLTPNYVLRSLITQWCMEHNIEQPTGLTNGKIKKSDGSFRDVTGDMEAIGALVQKLSSHNIEERRAAVAEIRSLSKRSTDNRILIAEAGAIPILVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGTIPSIVQILRAGSMEARENAAATLFSLSLADENKIIIGASGAILALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLAGHQEAKIAIVKASTIPVLIDLLRTGFPRNKENAAAILLALCKRDPENLACISRLGVIIPLTELARSGTERAKRKATSLLEHLRKLQHI 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0533 660 FunFam RING-type E3 ubiquitin transferase 560 659 - -
Lele53g0533 660 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Lele53g0533 660 MobiDBLite consensus disorder prediction 229 265 - -
Lele53g0533 660 SUPERFAMILY ARM repeat 378 654 IPR016024 -
Lele53g0533 660 SMART arm_5 410 450 IPR000225 GO:0005515
Lele53g0533 660 SMART arm_5 451 491 IPR000225 GO:0005515
Lele53g0533 660 SMART arm_5 574 614 IPR000225 GO:0005515
Lele53g0533 660 SMART arm_5 533 573 IPR000225 GO:0005515
Lele53g0533 660 SMART arm_5 492 532 IPR000225 GO:0005515
Lele53g0533 660 SMART arm_5 616 656 IPR000225 GO:0005515
Lele53g0533 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 359 IPR013083 -
Lele53g0533 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
Lele53g0533 660 PANTHER U BOX DOMAIN-CONTAINING 45 655 - -
Lele53g0533 660 SUPERFAMILY RING/U-box 278 355 - -
Lele53g0533 660 FunFam RING-type E3 ubiquitin transferase 458 558 - -
Lele53g0533 660 FunFam RING-type E3 ubiquitin transferase 280 355 - -
Lele53g0533 660 Coils Coil 153 173 - -
Lele53g0533 660 Pfam Armadillo/beta-catenin-like repeat 493 531 IPR000225 GO:0005515
Lele53g0533 660 Pfam Armadillo/beta-catenin-like repeat 411 449 IPR000225 GO:0005515
Lele53g0533 660 MobiDBLite consensus disorder prediction 229 259 - -
Lele53g0533 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 462 504 IPR000225 GO:0005515
Lele53g0533 660 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Lele53g0533 660 CDD RING-Ubox_PUB 285 327 IPR045210 -
Lele53g0533 660 FunFam RING-type E3 ubiquitin transferase 364 457 - -
Lele53g0533 660 Pfam U-box domain 281 352 IPR003613 GO:0004842|GO:0016567
Lele53g0533 660 Gene3D - 360 659 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0533 Lele-ChrLele53 15233943 15236886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0533 1 656 U-box Gene Family AT1G23030 60.578 0.0 725