Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0497 ATGTCTTGTTCTTCGTCATCATCAAGATCCCTTGTGTCTCTGGGCTCAGAAAGCTCATCTACAGCACTTCAACCGCGTCTTCAGTTCATTTTGCACAGCCGATCTGAGTGGTGGGTGTATATCATCTTCTGGCAAGCATCGAAAGACAACGACGGCGGAAGCAGCAGTAGTAGTAATAATATCAGGAGCCAAGTTTTAAATTTTGCCGATGGCCACTTCCGGGCAACCAGAGATTCCAAGTCCAAGGAAAACACGACGACGACAAGATCAGATCAATGGCAACGCCCTAATAATTACATGGAAGGCGAAGGACAACATATGACTGAGTTGGAATGGTTTTACACGGTATCATTGACCCGATCGTTCGCCGCCGGGGATGATGTTGTTGGTCGCGCCTTCAACTCAGGAACACATGTTTGGTTGGTGGCCGGTGGCGGCGACGGTGGCGTAGAGTTGCAGTTCCATGAGTGTGAGAGGGTTCGAGAAGCTGTTTCTTATGGAATCAAAACTCTGGTGTGTATTCCAATTCCTAATGCAGTTGGAGTTCTTGAACTGGCTTCCACTGATTTGATAACACAAGATTGGAATCTCATTCAATCGGTTAAATCGGTTTTCGAGTTCGACAACTTCATTAATATCCCCAATATTCCATTGCCAAATCTGCTTTCTGAATGTTTCCATGATTATTTCAAGAACGAAGCTCTCATCGACTCTGAAGAAGCTCTTTTTTTATCTTCCCCCTCCAAGCCTAAACCCGTCAGAAACAAGGGAAGATCAAACGACGTCGTTAAATCACAAGAGCTAATAATGCCACTAAACCACGTGGAAGCCGAGAGACAGAGAAGAGAACGATTGAATCAAAGATTCTATGCTCTTCGTTCTGCTGTTCCTAATGTGTCAAAAATGGACAAAGCTTCTTTGCTCTCTGACGCAGTCACTTACATTAATCAACTCAAGGCAAAAATTGAGGAACTTGAGGCCAGATTCAAGAACACAGAAGAGAAGGAAGAAGAAGCCGCGATGACGTCAATGCATTATCGCTCGAGTTCGGAGGCGAGTGCGGCGGCGGTCGGAGTCGAGGTTAATATCGTCGGAACGGAGGCAATCATAAGGGTTCAGTGCCTCGATGTGAATCATCCGGCGGCGAGGTTAATGGATGTGTTGAGACAACTTGATTTTCATGTACATCATGCCAGCGTGTCAAGAGTCAAAGACATAATGCTGCAAGACGTCGTCGTCAGGGTTCCCAATAATTTCTTAACTGCCGAGGCCATGAAAAATGCCATTCTACAACGTTTGCAGAACTAG 1308 0.4572 MSCSSSSSRSLVSLGSESSSTALQPRLQFILHSRSEWWVYIIFWQASKDNDGGSSSSSNNIRSQVLNFADGHFRATRDSKSKENTTTTRSDQWQRPNNYMEGEGQHMTELEWFYTVSLTRSFAAGDDVVGRAFNSGTHVWLVAGGGDGGVELQFHECERVREAVSYGIKTLVCIPIPNAVGVLELASTDLITQDWNLIQSVKSVFEFDNFINIPNIPLPNLLSECFHDYFKNEALIDSEEALFLSSPSKPKPVRNKGRSNDVVKSQELIMPLNHVEAERQRRERLNQRFYALRSAVPNVSKMDKASLLSDAVTYINQLKAKIEELEARFKNTEEKEEEAAMTSMHYRSSSEASAAAVGVEVNIVGTEAIIRVQCLDVNHPAARLMDVLRQLDFHVHHASVSRVKDIMLQDVVVRVPNNFLTAEAMKNAILQRLQN 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0497 435 SMART finulus 275 324 IPR011598 GO:0046983
Lele53g0497 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 336 IPR036638 GO:0046983
Lele53g0497 435 PANTHER MYC 10 432 IPR045084 GO:0003700|GO:0006355
Lele53g0497 435 MobiDBLite consensus disorder prediction 76 99 - -
Lele53g0497 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
Lele53g0497 435 Pfam Helix-loop-helix DNA-binding domain 273 319 IPR011598 GO:0046983
Lele53g0497 435 Coils Coil 308 342 - -
Lele53g0497 435 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 23 205 IPR025610 -
Lele53g0497 435 Gene3D - 271 336 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0497 Lele-ChrLele53 14488492 14489799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0497 23 433 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 35.731 2.10e-59 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele53g0497 bHLH-MYC_N 1.1e-38 CL0161