Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele53g0482 | ATGACGACTCGAATAGCGCCCGGAGTGGGAGCAAACTTGCTAGGTCAACACTCCGCAGAGAGGAATCAAGATGCTACAGCTTATGTTGGCAATCTCGATCCCCAGGTATCTGAGGAGTTATTATGGGAGCTGTTTGTTCAGGCTGGTCCAGTTGTCAATGTCTATGTTCCCAAAGACAGAGTGACTAACCAACATCAAGGTTATGGTTTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTTCTTAATATGATTAAGCTTTATGGAAAACCAATACGTGTAAATAAGGCTTCTCAAGACAAAAAGAGCTTGGATGTGGGAGCAAACCTTTTCATTGGAAACCTTGATCCTGATGTGGATGAGAAACTCTTGTATGATACATTCAGTGCCTTTGGAGTAATTGTTACAAATCCCAAGATCATGAGAGATCCCGAAACAGGAAATTCTCGTGGATTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGGCAATATCTTTGCAACCGTCAAATAACAGTGTCTTATGCATACAAGAAAGACACCAAAGGGGAAAGGCACGGCACTCCAGCTGAAAGAGTTCTGGCTGCCAGCAATCCAACTGCCCAGAAGAGTAGGCCTCACACTTTGTTTGCCAGCGGACCTCCAACCCTTCCCAATGTCCCTCAGGCTAACGGTGCCATTCCTGTTCCTGTGCCTCCTCGTCCTTATGCTAATGGAGTTGCTCCCCCAGCTTTTCCCGCCCTTCGACCACCACCTCCTCAAGCTGCACCATTTCCACCTTTGCCAGTGGCCCCTCAACCAGCATGGCATGAGCAGCAACCAGGTCAAACAATGCCACCGCCTGTGATGCCTCCGCCTCCTGTCCAGCAGTTCAGGCCACCTCACTCAAGTATGCCACCTCCTCCACCTCCACAAGTGTTGCCTGCTCCCCCAAGGCCTCTTCCACCACCAGCTGCAATGACAGGCCAACAACCTGTTTGGCGGCCACCTCCTCCCCCTCCACCGCAGCAACAGGGTGTGCGGCCCCCTTCATTCTCTTAA | 1080 | 0.4963 | MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPNVPQANGAIPVPVPPRPYANGVAPPAFPALRPPPPQAAPFPPLPVAPQPAWHEQQPGQTMPPPVMPPPPVQQFRPPHSSMPPPPPPQVLPAPPRPLPPPAAMTGQQPVWRPPPPPPPQQQGVRPPSFS | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele53g0482 | 359 | Gene3D | - | 107 | 204 | IPR012677 | - | |
| Lele53g0482 | 359 | MobiDBLite | consensus disorder prediction | 255 | 280 | - | - | |
| Lele53g0482 | 359 | PANTHER | SPLICING FACTOR 3B SUBUNIT 4 | 14 | 346 | - | - | |
| Lele53g0482 | 359 | MobiDBLite | consensus disorder prediction | 290 | 353 | - | - | |
| Lele53g0482 | 359 | CDD | RRM2_SF3B4 | 111 | 193 | IPR034159 | - | |
| Lele53g0482 | 359 | MobiDBLite | consensus disorder prediction | 255 | 359 | - | - | |
| Lele53g0482 | 359 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 184 | IPR000504 | GO:0003723 | |
| Lele53g0482 | 359 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 28 | 97 | IPR000504 | GO:0003723 | |
| Lele53g0482 | 359 | MobiDBLite | consensus disorder prediction | 208 | 232 | - | - | |
| Lele53g0482 | 359 | CDD | RRM1_SF3B4 | 28 | 100 | IPR034158 | - | |
| Lele53g0482 | 359 | Gene3D | - | 16 | 106 | IPR012677 | - | |
| Lele53g0482 | 359 | SUPERFAMILY | RNA-binding domain, RBD | 25 | 195 | IPR035979 | GO:0003676 | |
| Lele53g0482 | 359 | MobiDBLite | consensus disorder prediction | 193 | 241 | - | - | |
| Lele53g0482 | 359 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 191 | IPR000504 | GO:0003723 | |
| Lele53g0482 | 359 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 25 | 103 | IPR000504 | GO:0003723 | |
| Lele53g0482 | 359 | SMART | rrm1_1 | 26 | 99 | IPR000504 | GO:0003723 | |
| Lele53g0482 | 359 | SMART | rrm1_1 | 113 | 187 | IPR000504 | GO:0003723 | |
| Lele53g0482 | 359 | FunFam | splicing factor 3B subunit 4 | 109 | 200 | - | - | |
| Lele53g0482 | 359 | FunFam | Splicing factor 3b subunit 4 | 16 | 108 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele53g0482 | Lele-ChrLele53 | 14124000 | 14136237 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele53g0482 | 18 | 198 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 29.293 | 8.95e-19 | 85.9 |