Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0456 ATGGGATCCACTTCGACGCCGACCAAGTTTACGGAGAACAATTACTGGAGATACGTCACCAATTTCCACTTCCAGTGCCGCGGCAACCTGTCGCCGGAGCCACACTATCCGTCGATCATAAGATTTCCAAGAGGCTCCTCGCCGGAAGAGGCGACGGAGGCCAAAGCAGTTTTCATTGTCACCGGAATGACATGCACCGCCTGTGCTGGATCCGTGGAGAAGGCTGTCAAACGCCTTCCTGGAATTCGCGACGCCGCCGTCGATGTCTTGAACGGTAAAGCGCTGGTTCGGTACTTTCCGGCGACGGTTACGGAGGAAAGAATAAGAGAGGCCATTGAAGACGCTGGATTTGAAGCCAAGTTCATTGAAGAAGAATCAAACGAAAAGCCTTCTCAAATCTGCCGAATACACATAAAGGGTATGACTTGTACTTCTTGTTCCTCCACTGTTGAATCCCTTCTTCAAGCCATTCCTGGAGTTCAGAAAGCAGAAGTGGCCTTAGCAACTGAAGAAGCTCAAGTTCGTTATGACCCAAAGATCGTCACCTTCAATAATCACCTAAAGGAAGCCATCGAAGATGCAGGATTTGAAGCCATACTTATAAGCACAGGTGAAAACATAAGCAAAATAGAATTGAAAATTGAGGGCCCTAAAAAAACTGATCATCATCAATCTTTGATGAGGGCAATTGAAAAGTCTCTTCAGTCACTTCCAGGAGTTGAAAACGTAGCCATTAATCAAGAAATGAACAAGGTTTCCATTTCTTATAAACCCTATATGACAGGGCCCAGAACTTTCATTGAAGTCATAGAAGAATCTTCAAGTTTCAAGGCCATGATATTTCCTGATGGAGGAGGAGGAAGGGAGACTCATAATAGACAAGAGGAAATCAATAAATACTTCAAGTTATTCATGTGGAGTTTGGCTTTCTCCATTCCTGTATTTCTAACATCCATGGTCTTCATGCATGTTCCTAGAATTAACCATCTTCTAGATATGAAAGTGGTGAACAACCTGAACATTGGACTCCTCATAAGGTGGGAATTTTCGACCCCGGTACAGTTCTTCATTGGCAGGAGATTCTACATTGGGGCTTATAAATCCTTACGCAATGGTTCAGCTAACATGGATGTATTAATCGCCTTGGGAACAAATGCAGCTTACTTCTATTCTGTTTATGTTGTGATCAGAGAGTCTTTAGTTAGAGACTTCATGGGAAGTGATTTTTTTGAGACTAGCTCTATGCTTATCTCATTTATTCTTTTAGGCAAGTACCTGGAAGTGTTAGCAAAGGGAAAGACATCACAAGCCATTGCCAAACTAATGGAATTGACTCCTGACACAGCAATCTTGTTAACTGTAAATGATGAAGGCAACAATGTAACAAGTGAACAGAAAATAGATAGCAGGTTGATACAAAAGGATGATGTGATAAAAATAGTACCTGGTGCCAAAGTAGCATCGGATGGTTTTGTGATTTGGGGACAAAGCCATGTAAATGAGAGCATGATAACAGGAGAAGCCAGGCCTGTGGCAAAGAAGAAGGGTGATATGGTGATTGGAGGCACTGTAAATGGCAATGGAGTTTTGCATGTGAAGGTGACAAGAATTGGATCAGAGAGTGCCCTCTCGCAGATTGTTCGACTTGTTGAGTCAGCTCAGATGTCTAAAGCTCCTGTTCAGAAGCTTGCAGACCGTATTTCCAAATACTTTGTGCCACTGGTTATAATGCTTTCTCTTGCAACTTGGATGTCCTGGTTCGTGGCTGGACAATTACATGCATACCCAGAATCTTGGATTCCGTGCTCCATGAGCAGCTTTGAGCTTGCACTTCAGTTTGGGATCTCGGTGATGGTCATAGCCTGTCCTTGTGCTTTAGGCCTAGCCACTCCTACAGCTGTCATGGTTGGTACTGGAGTTGGCGCGACTCAGGGCGTGTTGATCAAAGGTGGCCAAGCATTAGAAAAGGCACATCAGGTGAATTGCATTGTCTTCGATAAGACTGGAACTTTAACAGTTGGGAAACCAGTCGTTGTAAGCACAACACTCTTCAAGAAGATAACACTTCAAGATTTCTACAAATTTGTTCTTGCAACTGAGGTGAACAGTGAACACCCAATAGCCAAGGCCATTGTTGAGCATGCTGATAAAGCCATAGAAGATGATGAAAAGAACCATGCATGGCCAGAAGCATGTGATTTTGTTTCCATTTCAGGCCATGGAGTGAAGGCCAATGTTCGAGACAAGGAAATAATAGTTGGGAATAAGAAGTTGATGCAGGATCATAACATAGTCATTCCACTGGATGCTGAAGAAACACTAGCTGAGGCTGCAAGGTTGGCACAAACTGGAATTCTGGTGTCCATAGATAGAGAAATTGCAGGAGTCCTAGCAATATCTGATGCGTTGAAACCAAGCGCCAAAGAAGTCATTTCCATCCTTAACTCCATGAAAATTAAAAGCGTCCTGGCGACAGGAGATAACTGGGGAACTGCAAATTCCATTGCCAGACAAGTTGGGATTGAAACTGTCATAGCTGAAGCGCAGCCTGAGGTTAAAGCAGACAAAGTAAAAGATTTGCAGTCTTCTGGCTACACTGTGACAATGGTGGGAGATGGCATCAATGATTCACCAGCACTTGTGGCGGCTGATGTGGGAATGGCAATTGGTGCTGGAACAGATATTGCTATTGAGGCAGCTGACATAGTGCTCACGAAGAGCAACTTAGAAGACATAATAATTGCCATTGATCTTGCCAAGAAAACTTTCTCTAGGATTCGTCTAAACTACATTTGGGCTCTGGGATACAATCTTCTGGCAATTCCAATAGCTGCTGGAATCCTTTACCCATCTACCGAATTCCGGTTACCGCCATGGATTGCTGGAGCTGCAATGACAACATCTTCCGTCAGTGTTGTCTGCTCCTCCCTCTTGTTGAAGAACTACAGGAGACCCCCAAAGCTGAATAACCTGGACATGATTGACATTAAGATTGAATAA 3000 0.438 MGSTSTPTKFTENNYWRYVTNFHFQCRGNLSPEPHYPSIIRFPRGSSPEEATEAKAVFIVTGMTCTACAGSVEKAVKRLPGIRDAAVDVLNGKALVRYFPATVTEERIREAIEDAGFEAKFIEEESNEKPSQICRIHIKGMTCTSCSSTVESLLQAIPGVQKAEVALATEEAQVRYDPKIVTFNNHLKEAIEDAGFEAILISTGENISKIELKIEGPKKTDHHQSLMRAIEKSLQSLPGVENVAINQEMNKVSISYKPYMTGPRTFIEVIEESSSFKAMIFPDGGGGRETHNRQEEINKYFKLFMWSLAFSIPVFLTSMVFMHVPRINHLLDMKVVNNLNIGLLIRWEFSTPVQFFIGRRFYIGAYKSLRNGSANMDVLIALGTNAAYFYSVYVVIRESLVRDFMGSDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMELTPDTAILLTVNDEGNNVTSEQKIDSRLIQKDDVIKIVPGAKVASDGFVIWGQSHVNESMITGEARPVAKKKGDMVIGGTVNGNGVLHVKVTRIGSESALSQIVRLVESAQMSKAPVQKLADRISKYFVPLVIMLSLATWMSWFVAGQLHAYPESWIPCSMSSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALEKAHQVNCIVFDKTGTLTVGKPVVVSTTLFKKITLQDFYKFVLATEVNSEHPIAKAIVEHADKAIEDDEKNHAWPEACDFVSISGHGVKANVRDKEIIVGNKKLMQDHNIVIPLDAEETLAEAARLAQTGILVSIDREIAGVLAISDALKPSAKEVISILNSMKIKSVLATGDNWGTANSIARQVGIETVIAEAQPEVKADKVKDLQSSGYTVTMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLTKSNLEDIIIAIDLAKKTFSRIRLNYIWALGYNLLAIPIAAGILYPSTEFRLPPWIAGAAMTTSSVSVVCSSLLLKNYRRPPKLNNLDMIDIKIE 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0456 999 FunFam Copper-transporting ATPase 1, putative 431 554 - -
Lele53g0456 999 SUPERFAMILY Calcium ATPase, transduction domain A 464 550 IPR008250 -
Lele53g0456 999 PRINTS Copper-transporting ATPase signature 413 432 - -
Lele53g0456 999 PRINTS Copper-transporting ATPase signature 361 380 - -
Lele53g0456 999 PRINTS Copper-transporting ATPase signature 433 451 - -
Lele53g0456 999 PRINTS Copper-transporting ATPase signature 647 662 - -
Lele53g0456 999 PRINTS Copper-transporting ATPase signature 943 957 - -
Lele53g0456 999 PRINTS Copper-transporting ATPase signature 847 864 - -
Lele53g0456 999 SUPERFAMILY HMA, heavy metal-associated domain 131 204 IPR036163 GO:0046872
Lele53g0456 999 SFLD Haloacid Dehalogenase 646 921 - -
Lele53g0456 999 Pfam haloacid dehalogenase-like hydrolase 660 884 - -
Lele53g0456 999 Gene3D - 52 124 - -
Lele53g0456 999 Gene3D - 431 554 - -
Lele53g0456 999 CDD HMA 57 120 IPR006121 GO:0046872
Lele53g0456 999 ProSiteProfiles Heavy-metal-associated domain profile. 55 121 IPR006121 GO:0046872
Lele53g0456 999 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 27 996 - -
Lele53g0456 999 ProSitePatterns Heavy-metal-associated domain. 60 89 IPR017969 GO:0046872
Lele53g0456 999 ProSitePatterns E1-E2 ATPases phosphorylation site. 666 672 IPR018303 -
Lele53g0456 999 CDD HMA 138 198 IPR006121 GO:0046872
Lele53g0456 999 PRINTS P-type cation-transporting ATPase superfamily signature 817 827 - -
Lele53g0456 999 PRINTS P-type cation-transporting ATPase superfamily signature 664 678 - -
Lele53g0456 999 PRINTS P-type cation-transporting ATPase superfamily signature 893 905 - -
Lele53g0456 999 PRINTS P-type cation-transporting ATPase superfamily signature 795 806 - -
Lele53g0456 999 PRINTS P-type cation-transporting ATPase superfamily signature 870 889 - -
Lele53g0456 999 PRINTS P-type cation-transporting ATPase superfamily signature 500 514 - -
Lele53g0456 999 Gene3D - 751 801 IPR023299 GO:0000166
Lele53g0456 999 Gene3D - 671 750 IPR023299 GO:0000166
Lele53g0456 999 SUPERFAMILY Calcium ATPase, transmembrane domain M 413 655 IPR023298 -
Lele53g0456 999 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 376 979 IPR027256 GO:0006812|GO:0016020|GO:0019829
Lele53g0456 999 ProSiteProfiles Heavy-metal-associated domain profile. 133 200 IPR006121 GO:0046872
Lele53g0456 999 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 416 949 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele53g0456 999 PRINTS Copper-transporting ATPase 1 signature 55 80 - -
Lele53g0456 999 PRINTS Copper-transporting ATPase 1 signature 81 104 - -
Lele53g0456 999 PRINTS Copper-transporting ATPase 1 signature 110 130 - -
Lele53g0456 999 PRINTS Copper-transporting ATPase 1 signature 156 177 - -
Lele53g0456 999 TIGRFAM TIGR00003: copper ion binding protein 136 198 IPR006122 GO:0005507
Lele53g0456 999 TIGRFAM TIGR00003: copper ion binding protein 57 119 IPR006122 GO:0005507
Lele53g0456 999 SUPERFAMILY HMA, heavy metal-associated domain 53 125 IPR036163 GO:0046872
Lele53g0456 999 Pfam Heavy-metal-associated domain 228 272 IPR006121 GO:0046872
Lele53g0456 999 Pfam Heavy-metal-associated domain 57 118 IPR006121 GO:0046872
Lele53g0456 999 Pfam Heavy-metal-associated domain 136 197 IPR006121 GO:0046872
Lele53g0456 999 SUPERFAMILY HMA, heavy metal-associated domain 227 272 IPR036163 GO:0046872
Lele53g0456 999 SUPERFAMILY HAD-like 663 976 IPR036412 -
Lele53g0456 999 Pfam E1-E2 ATPase 458 642 - -
Lele53g0456 999 ProSitePatterns Heavy-metal-associated domain. 138 167 IPR017969 GO:0046872
Lele53g0456 999 SFLD p-type atpase 646 921 IPR044492 -
Lele53g0456 999 CDD HMA 224 272 IPR006121 GO:0046872
Lele53g0456 999 FunFam Copper-transporting ATPase HMA5 53 124 - -
Lele53g0456 999 Gene3D - 211 279 - -
Lele53g0456 999 CDD P-type_ATPase_Cu-like 304 965 - -
Lele53g0456 999 FunFam Copper-transporting ATPase HMA5 131 203 - -
Lele53g0456 999 Gene3D - 631 927 IPR023214 -
Lele53g0456 999 Gene3D - 133 202 - -
Lele53g0456 999 FunFam Probable copper-transporting ATPase HMA5 784 927 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0456 Lele-ChrLele53 12456777 12468730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0456 54 999 Primary Pumps ATPases AT1G63440 70.873 0.0 1396