Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0446 ATGCAGGAGTTGGGGGAGAAGCGTGCTGAACTGAAAGTTCTTCTTGAACTCCTTTCTGATGCTAAAAATTTGTGTGTAAGGATTGATGAGACAGATGCTCTCAACCAACTTGTTGAGCAAGCACTACTATGCAGATCTTGCTTGAGAGAAGTGGTGAACTTTACATCAGCTAATGTAGACAGTGATCTTAGTATCATCTCTGAAAGATTGACCATAGCTATAAAGGCTTGTGAAGTTGCTGGTGTCTGTGATCATCAAGATTTACATGACCTTGAGTTGGCATTAGCAAGACACCTTTGGAAAGTTCAAGTCAATGGAATGCTAAATAGTTTACAAAATCCTTCTATCCAAGAGATACAGAAGCATCTGAAAGAGGTTGCAGTTGATTCTGGGGCGCGCAGCCTAGATGAAGTTTTTGAACTCATTGAAGAAGGTGAAAACTTGCCTGTTAATGTGAATGAGGATCTCAGGATTTTAAGGGCTCGAAGTATGCTTTATTGCATTTGTCGAAAACCGTTTGATCCAGGGAGGATGATTGCATGTAATCAATGTGGTGAGTGGTATCACTTTGATTGCATGAAATTACCATACAGTCAAGAGTTCTACATTTGTCCTGCATGTAACCCCTCTACAGCAGGAGGAATGCCAACATCTCTGGATCATGAGAGATTAACTAGCCGTAAACTGGAGGAACCTAAAACACCATCTCCAAGGCATACGTATCCAAGAAAGAAACAAAAGAGAGATGAGGCAATGTGTGGAAGAGATGATCAAATTCAAATTAATAATTTTAGGAATCTGAGTGGGATAGACTGTCTTAGGTGGCAAAATCGAAAGCCTTTCAGAAGAGCAGCTAAGAAACGTGTTGACCTTCGGAGTCTTTCTTCATTTCTATGTATACACAACAACACTAACTGA 918 0.4031 MQELGEKRAELKVLLELLSDAKNLCVRIDETDALNQLVEQALLCRSCLREVVNFTSANVDSDLSIISERLTIAIKACEVAGVCDHQDLHDLELALARHLWKVQVNGMLNSLQNPSIQEIQKHLKEVAVDSGARSLDEVFELIEEGENLPVNVNEDLRILRARSMLYCICRKPFDPGRMIACNQCGEWYHFDCMKLPYSQEFYICPACNPSTAGGMPTSLDHERLTSRKLEEPKTPSPRHTYPRKKQKRDEAMCGRDDQIQINNFRNLSGIDCLRWQNRKPFRRAAKKRVDLRSLSSFLCIHNNTN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0446 305 ProSitePatterns Zinc finger PHD-type signature. 167 207 IPR019786 -
Lele53g0446 305 SMART PHD_3 166 208 IPR001965 -
Lele53g0446 305 PANTHER CXXC-TYPE ZINC FINGER PROTEIN 1 124 213 IPR037869 GO:0048188
Lele53g0446 305 SUPERFAMILY FYVE/PHD zinc finger 162 212 IPR011011 -
Lele53g0446 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 209 IPR013083 -
Lele53g0446 305 Coils Coil 1 21 - -
Lele53g0446 305 Pfam PHD-finger 166 209 IPR019787 -
Lele53g0446 305 MobiDBLite consensus disorder prediction 226 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0446 Lele-ChrLele53 12179737 12183312 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele53g0446 PHD 4e-09 CL0390