Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0443 ATGCGTGAGAGAGAAACATGCGAAGAACAAGAAGCTGAGCAGGAGCAGAGCCATGTTTGGTGCGTAGAGGATCCATCCTGCAGAGAAATTAGAAGGCCTCTTTTTGAAACTGAAGGCAATTATTTCCAGAAGATGGTGCCCGAGAACATGAAGAAACAACTTGCTTTGGCTGTGAGGAGCATCCAATGGAGCTATGCAGTATTCTGGTCGGCTTCTAGTAGCCAACCTGGGATATTGAAATGGGGTGGGGGATATTACAATGGTGACATAAAGACTAGGAAAACAAGTCAGGCAGTACAGCTTAGTTCCGACCAAATAGGTTTGCAGAGGAGTGAGCAGTTGAGAGAGCTATTCGAATCCCTTGCAACTGCAGAATCCACCCCACAAATTAAAAGGCCTTCAACTGCACTAAGCCCTGAAGACCTCACTGATACCGAGTGGTATTACTTGGTTTGCATGTCCTTTGTATTCAATATTGGCCAAGGATTACCTGGACGAACTCTAGTGAATGGTCAACCTCTTTGGGTTTACAATGCCCCTTATGCTGATTGTAGAGTTTTTAGTCGCACTCTGCTTGCAAAGACTGTGGTATGCTTCCCTTTTCTGGAAGGTGTTGTTGAGCTTGGAACAAGTGATTTGATCTTAGAAGACCTCAGTCTCATTCAACGTATAAAAACTTGTTTCCTGGATATTCTGAATACTAATAATAAGTCTGGATCTACATTTAAAACGAGAAACAATAAAGATATTGCTTCTGTAGAATTTGGCCAAAGTGCTTATGATGCCAAATTACCAGAAGTGGGATATGCTGTAAACAGTAAAACTTCTGCCAATAGTTTAAATGCGATTGAAGCGAACCGACTGGCGGATGAGACGTATATGGATGAAAGAGTAAATGGTGGTGCTTCTCAGGTCCAAAGCTTGCAAGCTATGGATGATGAATTAAGTAATGATGCCCGAAACTCGATGGCTTCTAGTGACTGTAGTTCTCAAACTCTTGCTGATCCTGAAAAGACTCCCTCTGGTCCCAAGGATCAAAACCCAGCTGACCATTCTGCACAATATATCCAACAGTGTAATAAAACAAAAATGACCTTAAATGATCGTCGAAATGATGACTGGCATTATCGAAAAGTTCTTTCTGCAATTCTAAAAGACTCAGGCCAGTTAGCTATTAGAGCACATTTTCAAAGTAGTGATAAGGAATCCAGCTTTGTTAGTTGTAAGAAGGGAGGATCAATGAGTTGTCAAAGGCTTATTAGAGGAGGAAACCCGCAGAAGATGTTAAAGAAGCTATTGTTTGAAGTTCCTCGGATGCATATGGACGTGCTTCTCGAGTGTCAAGAAGAAAATGATTACAAAGAGAGAATTAGACCAGAGGTTGATGAAATTGGTATGAACCATGTATTGTCAGAAAGGAGGAGAAGAGCAAAACTAAATGAAAGGCTTTTAACTCTTAGATCAATGGTCCCTTCAGTGAGTAAGGATGACAAAGTTTCAATACTAGACGATGCGATCCAATACCTTAGAAAGCTCGAGAAGAAGGTTAAAGAATTGGAAGCATGTAAGGAGCTAATAGATTTAGAAATCAAAGCTAAAAAAACACCTCAAGATATGGTAGAGAGGACTTCGGATAATTATTTTAACAGAACTGATAATGGCACGAAGCCAATGAATAACAAAAGAAAGGCGTGTAACATTGAAGATACATGGCAAGACAATGATTCGGTTGCGCTAAATGACAGTTCTACTAGTAGCATTACTATCAGTTCGAACGACCCCGATGTTCTGATCGAAATGAAATGTCCATGGATAGAAGGAGTGGTGATGAAAACTATGGAAGCACTTAGGAGTTTCCACTTGGATTTACGATCAATTCAGTCATCAGAAGCTGATGGGATTCTTCATATAACCATTAGATCTCAGTGGAGAGGATCAACCATTGCATCGGTGAAAAAGATAAAACAAGCGCTGCAAAAAGTGGCTCGGAACCGTTGA 1998 0.4079 MRERETCEEQEAEQEQSHVWCVEDPSCREIRRPLFETEGNYFQKMVPENMKKQLALAVRSIQWSYAVFWSASSSQPGILKWGGGYYNGDIKTRKTSQAVQLSSDQIGLQRSEQLRELFESLATAESTPQIKRPSTALSPEDLTDTEWYYLVCMSFVFNIGQGLPGRTLVNGQPLWVYNAPYADCRVFSRTLLAKTVVCFPFLEGVVELGTSDLILEDLSLIQRIKTCFLDILNTNNKSGSTFKTRNNKDIASVEFGQSAYDAKLPEVGYAVNSKTSANSLNAIEANRLADETYMDERVNGGASQVQSLQAMDDELSNDARNSMASSDCSSQTLADPEKTPSGPKDQNPADHSAQYIQQCNKTKMTLNDRRNDDWHYRKVLSAILKDSGQLAIRAHFQSSDKESSFVSCKKGGSMSCQRLIRGGNPQKMLKKLLFEVPRMHMDVLLECQEENDYKERIRPEVDEIGMNHVLSERRRRAKLNERLLTLRSMVPSVSKDDKVSILDDAIQYLRKLEKKVKELEACKELIDLEIKAKKTPQDMVERTSDNYFNRTDNGTKPMNNKRKACNIEDTWQDNDSVALNDSSTSSITISSNDPDVLIEMKCPWIEGVVMKTMEALRSFHLDLRSIQSSEADGILHITIRSQWRGSTIASVKKIKQALQKVARNR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0443 665 Coils Coil 502 529 - -
Lele53g0443 665 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 50 228 IPR025610 -
Lele53g0443 665 MobiDBLite consensus disorder prediction 317 351 - -
Lele53g0443 665 PANTHER TRANSCRIPTION FACTOR TT8 44 663 - -
Lele53g0443 665 Gene3D - 463 524 IPR036638 GO:0046983
Lele53g0443 665 Pfam Helix-loop-helix DNA-binding domain 467 513 IPR011598 GO:0046983
Lele53g0443 665 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 463 512 IPR011598 GO:0046983
Lele53g0443 665 MobiDBLite consensus disorder prediction 317 337 - -
Lele53g0443 665 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 466 529 IPR036638 GO:0046983
Lele53g0443 665 SMART finulus 469 518 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0443 Lele-ChrLele53 11970241 11974945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0443 46 662 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 45.131 2.03e-168 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele53g0443 bHLH-MYC_N 3e-44 CL0161