Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0437 ATGACTGCTGCTTCGTCCCGTAACAGTGGAAGCAACGCCTACGACGTCCCTTGGGTTGAGAAGTATCGACCCTCCAAGGTCGCAGACATCGTGGGTCCTCCTGGAACTGGGAAAACTACTAGTGTTCTAGCGCTTGCGCATGAACTTCTGGGACAAAATTTCAGGGAAGATGTTCTTGAGCTCAATGCGCCAGATGATAGAGGAATTGATGTTGTGAGGAACAAGATCAAGATGTTCGCACAAATGAAAGTGACACTACCTCCTGGGCGACACAAAATAGTAACACTGGATGAAGCTGACAGCATGACATCAGGAGCTCAGCAAGCTTTGAGAAGGACTATGGAAATATATTCAAATTCCACTCGTTTTGCTCTTGCATGCAATACATCATCTAAAATTATTGAACCAATTCAGCGTAGATGTGCTATTGTGAGATTTTCTCGATTATCTGATCAAGAAATACTTGGTCGTCTCATGGTAGTGGTTGAAGCTGAGAAGGCACTTGAGCACTTTTTTATGTATAAGTTTCTTCCTCTGAAGTGGTTTGCAGAATGCCTTGAAGCCATCATTTTCACTGCGGATGGTGATATGAGGCAGGTGTTGAATAACTTGCAGGCAACACACAGTGGGTTCCGATTTGTTAACCAAGAAAATGTATTCAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGTTCTTATCTTCAGCTCTGTGGCCTGTTGGCTAAGTTTTCTCTGGTTCGAGAAACAGCTAAAACTGTTTGA 774 0.4341 MTAASSRNSGSNAYDVPWVEKYRPSKVADIVGPPGTGKTTSVLALAHELLGQNFREDVLELNAPDDRGIDVVRNKIKMFAQMKVTLPPGRHKIVTLDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQRRCAIVRFSRLSDQEILGRLMVVVEAEKALEHFFMYKFLPLKWFAECLEAIIFTADGDMRQVLNNLQATHSGFRFVNQENVFKETGFAHMRICDGVGSYLQLCGLLAKFSLVRETAKTV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0437 257 CDD HLD_clamp_RFC 149 221 - -
Lele53g0437 257 Gene3D - 10 149 IPR027417 -
Lele53g0437 257 Pfam ATPase family associated with various cellular activities (AAA) 30 146 IPR003959 GO:0005524|GO:0016887
Lele53g0437 257 Gene3D - 150 222 - -
Lele53g0437 257 CDD AAA 30 144 - -
Lele53g0437 257 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 32 221 - -
Lele53g0437 257 SUPERFAMILY post-AAA+ oligomerization domain-like 219 251 IPR008921 GO:0003677|GO:0006260
Lele53g0437 257 SMART AAA_5 24 150 IPR003593 -
Lele53g0437 257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 220 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0437 Lele-ChrLele53 9978366 9981452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0437 12 255 Core DNA Replication Machinery Family AT1G63160 56.456 2.36e-115 332