Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0421 ATGAGACAAGCGGGAGCATATTCAAGGCTATACTGTGGGGGGATGGGGCCTCACGCGCTGCCATTGGCGAGGATAAAGAAGATAATGAAGAAATCAGGGGATGACGTCAAGATGATATCAGGTGAGGCTCCTATTACTTTTGCAAAAGCTTGTGAGCTCTTCATTGAAGAACTCATCAGAAGGTCCTGGATCATGACCACTCACTCCAAGCGGAGGACCCTCCTCAAAGACGACGTCGCTTCCGCCATCATTGCCACCGATCTCTTCGACTTCTTGATCTCTCTCGTCACCCGCGTCTCTCCCTCACCACCATCGCATCTTAAACCCTCATGTCATGTTTGGCATGAGCGGTAG 354 0.5085 MRQAGAYSRLYCGGMGPHALPLARIKKIMKKSGDDVKMISGEAPITFAKACELFIEELIRRSWIMTTHSKRRTLLKDDVASAIIATDLFDFLISLVTRVSPSPPSHLKPSCHVWHER 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0421 117 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 20 83 IPR003958 -
Lele53g0421 117 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 18 101 - -
Lele53g0421 117 FunFam Nuclear transcription factor Y subunit C 3 98 - -
Lele53g0421 117 Gene3D Histone, subunit A 13 98 IPR009072 GO:0046982
Lele53g0421 117 SUPERFAMILY Histone-fold 14 92 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0421 Lele-ChrLele53 6890661 6891014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0421 18 98 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.728 5.26e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele53g0421 CBFD_NFYB_HMF 9e-18 CL0012