Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0405 ATGGACCCAATTACAGCTCATCCCCATTCTCTTCCTCCTCCATTTCACACGAGGGATCTTCATCATCCACAGCATCAATTTCACTCTCTCCATCAAACCATAGAAGATGAGCAGAGCGGAAGCAGCGGTGGCCTCAACCTCGCTCACAAAAGGGATCGAGAAGAAAACAGCAACAGCGACGGCAAAGACATGGAGGCCATGGAGGCCGGGGCCGCCTCCGGCGAAGGCGACATCACGAGAAGACCCCGAGGAAGACCTGCTGGGTCCAAGAACAAACCGAAGTCGCCCATCATCATCACGCGCGACAGCGCAAACTCCTTAAGAACCCATGTGATGGAGGTTGCCGATGGCTGCGACATCGTCGAGAGCGTCTCCAACTTCGCACGGCGGAGGCAGAGAGGGGTTTGCATAATGAGCGGGACGGGGACGGTAACGAACGTCACTCTGAGGCAGCCAGCTTCTCCGGCAGCCGTCGTCACTCTCCATGGAAGGTTCGAGATATTGTCACTGGCCGGATCATTCTTACCGCCACCAGCTCCTCCGGCGGCATCAGGATTAACGATATATTTAGCAGGAGGACAAGGGCAAGTGGTAGGAGGAAGCGTGGTTGGGACAATAATAGCTTCAGGTCCAGTGGTGATCATGGCGGCATCGTTCAGTAACGCTGCGTATGAGAGGCTTCCTTTGGAAGAAGACGATCCCTCCATGCCGATGCAAGGCGGCGGCGGTGGCGATGGCGGAATTGGGTCACCTGGAAGTGGCGGTCAACAGCAAGCAGGGCAGCTTTTAGGCGACGCAAACGCAACGGCTACACTTTTCCATGGTCTGCCACCGAATCTTCTGAATTCTATACAGATGCCATCGGAAGCATTCTGGGCTACAGGTCGCCCTCCATACTGA 900 0.5567 MDPITAHPHSLPPPFHTRDLHHPQHQFHSLHQTIEDEQSGSSGGLNLAHKRDREENSNSDGKDMEAMEAGAASGEGDITRRPRGRPAGSKNKPKSPIIITRDSANSLRTHVMEVADGCDIVESVSNFARRRQRGVCIMSGTGTVTNVTLRQPASPAAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTIIASGPVVIMAASFSNAAYERLPLEEDDPSMPMQGGGGGDGGIGSPGSGGQQQAGQLLGDANATATLFHGLPPNLLNSIQMPSEAFWATGRPPY 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0405 299 CDD DUF296 108 175 IPR005175 -
Lele53g0405 299 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 43 294 IPR014476 GO:0003680
Lele53g0405 299 MobiDBLite consensus disorder prediction 1 97 - -
Lele53g0405 299 Pfam Plants and Prokaryotes Conserved (PCC) domain 108 221 IPR005175 -
Lele53g0405 299 FunFam AT-hook motif nuclear-localized protein 107 234 - -
Lele53g0405 299 SUPERFAMILY AF0104/ALDC/Ptd012-like 104 233 - -
Lele53g0405 299 MobiDBLite consensus disorder prediction 14 32 - -
Lele53g0405 299 MobiDBLite consensus disorder prediction 47 62 - -
Lele53g0405 299 ProSiteProfiles PPC domain profile profile. 104 240 IPR005175 -
Lele53g0405 299 MobiDBLite consensus disorder prediction 230 260 - -
Lele53g0405 299 Gene3D - 107 235 - -
Lele53g0405 299 PIRSF ESCAROLA 16 299 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0405 Lele-ChrLele53 4714556 4715455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0405 1 299 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 56.845 9.09e-88 263