Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0388 ATGGGGCGTATGCACAGCCGTGGGTTTGGACAGTTCTATCTCCTCCATCAATTTCTTCTGTTTTACAGTAAAACTTGTTTTTCTGATTTTCCTTCTTTGGTTTCGTGTCGCAGTAAGGGTATCTCAGCTTCGGCGTTGCCCTACAAGAGAACGCCGCATAGCTGGCTCAAGATCTCTTCGCAAGATGTTGAAGAAAACATCTGCAAATTCGCGAAGAAGGGTTTGACTCCGTCGCAGATTGGTGTCATTCTCCGAGATTCTCACGGTATTGCGCAGGTTAAGAGCGTTACTGGCAACAAAATCTTGCGCATTCTCAAAGCGCACGGACTTGCGCCCGAAATTCCAGAGGATCTTTATCATTTGATCAAGAAGGCAGTTTCAATTCGCAAGCATCTTGAGAGAAACAGGAAGGACAAAGACTCCAAGTTCAGGTTAATTCTGGTCGAAAGCAGAATTCATCGGCTTGCTCGCTATTACAAGAAAACTAAGAAGCTCCCACCAGTATGGAAATATGAATCAACAACTGCCAGCACTCTGGTCGCTTAG 546 0.4542 MGRMHSRGFGQFYLLHQFLLFYSKTCFSDFPSLVSCRSKGISASALPYKRTPHSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0388 181 Pfam Ribosomal S13/S15 N-terminal domain 37 90 IPR012606 GO:0003735|GO:0005840|GO:0006412
Lele53g0388 181 Pfam Ribosomal protein S15 104 175 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lele53g0388 181 Gene3D - 113 181 - -
Lele53g0388 181 CDD Ribosomal_S15p_S13e 100 173 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lele53g0388 181 ProSitePatterns Ribosomal protein S15 signature. 128 158 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lele53g0388 181 SMART Ribosomal_S13_N_2 37 90 IPR012606 GO:0003735|GO:0005840|GO:0006412
Lele53g0388 181 Gene3D - 65 112 - -
Lele53g0388 181 FunFam 40S ribosomal protein S13 65 112 - -
Lele53g0388 181 SUPERFAMILY S15/NS1 RNA-binding domain 96 172 IPR009068 -
Lele53g0388 181 FunFam 40S ribosomal protein S13 113 181 - -
Lele53g0388 181 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 181 IPR023029 -
Lele53g0388 181 SMART Ribosomal_S15_2 100 179 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lele53g0388 181 Hamap 30S ribosomal protein S15 [rpsO]. 33 179 IPR023029 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0388 Lele-ChrLele53 3921502 3923177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0388 1 181 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 77.901 3.34e-95 271