Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0379 ATGGGGAGACAACCTTGCTGTGACAAACTTGAGGTGAAGAAAGGACCATGGACTGCAGAAGAAGACAAGAAGCTCATCAACTTCATTCTCATTAATGTTCACTGTTGCTGGCGAGCCGTTCCGAAGCTCGCCGGCCTCAGGCGATGCGGCAAGAGTTGTAGGCTTCGTTGGACTAACTATCTTCGTCCTGATTTGAAGAGAGGGAACCTCACTGATGCAGAAGAGAACCTCATCATCGATCTCCATTCTCACCTTGGCAACAGGTGGTCTATGATAGCGGCGAAATTACCAGGAAGAACAGACAATGAGATTAAAAATCATTGGAACACACACATCAAGAAGAAGCTGCTTAAGATGGGTATTGATCCTGTTACTCATGAGCCTCTCAACAAAGAACCTGTTTCCCAGGAGGATAATTCATCCCCTGCAGAGAATTTGTCACAATCTGACAGTGATCACAATCATCAGGTGAATGTTCTGAACTCAAAGGAGAGTTCAATCTCATCATCATCACCAACTGAAAATTCATGTGGGGAAGAACAAATTTCACAAGAAATTAACCGTCGCGACGACAATGACTTGTGGCCGAACGAAACTTCACTGGTGGATTCATTATGGGAAAGTATATCTGATACACAGAATGAGAATTATGACTTGGCACTGTCATCATCTTGGGAGGATACTAGTTCCAGCTGGTTATTGGACTCTCAGGACTTTGGTTTTAATTGCTTCAATGAGATTGAGCCTCATGCCCTCCTCCAGACTTTAGGAATGGAGGAGGAGAAGGAACATTAG 795 0.4428 MGRQPCCDKLEVKKGPWTAEEDKKLINFILINVHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGNLTDAEENLIIDLHSHLGNRWSMIAAKLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKEPVSQEDNSSPAENLSQSDSDHNHQVNVLNSKESSISSSSPTENSCGEEQISQEINRRDDNDLWPNETSLVDSLWESISDTQNENYDLALSSSWEDTSSSWLLDSQDFGFNCFNEIEPHALLQTLGMEEEKEH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0379 264 FunFam MYB transcription factor 11 67 - -
Lele53g0379 264 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele53g0379 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele53g0379 264 SMART sant 66 114 IPR001005 -
Lele53g0379 264 SMART sant 13 63 IPR001005 -
Lele53g0379 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele53g0379 264 FunFam transcription factor MYB80 69 129 - -
Lele53g0379 264 PANTHER F14D16.11-RELATED 1 201 - -
Lele53g0379 264 CDD SANT 71 112 IPR001005 -
Lele53g0379 264 MobiDBLite consensus disorder prediction 134 182 - -
Lele53g0379 264 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lele53g0379 264 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele53g0379 264 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele53g0379 264 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lele53g0379 264 Gene3D - 69 158 - -
Lele53g0379 264 MobiDBLite consensus disorder prediction 125 195 - -
Lele53g0379 264 CDD SANT 16 61 IPR001005 -
Lele53g0379 264 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0379 Lele-ChrLele53 3710212 3711154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0379 1 244 MYB Transcription Factor Family AT4G12350 54.874 3.40e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele53g0379 Myb_DNA-binding 5.9e-11 CL0123