Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0376 ATGGCGACGGAGACTTTCAGAGTGACGGCGCCCTCAGCTTCAGCTTCCTCTCTCCGCAATTTCAACAATGGGTCTCCAAGGAAGCCAAGCCCCCTCTCTCCACTCCCTTTCATGGGTGTTCGACCTCGACCCTCTCGTTCCCTTACTTCATCTTCTCTTTCTCAGTTCTTTGGAACTTCCCCAATTAAGTATAAATCCTCCCAGCTCTCTTATTTGAGCCACCAGAGCAGACGAAACTTGTCTGTTTTCGCCATGGCTGCCGAAGATGCGAGTCGAGCTGTTCCATTGAAAGATTATCGCAACATTGGTATCATGGCACACATTGATGCTGGAAAGACAACCACAACCGAAAGAATTCTCTACTATACAGGAAGAAACTACAAAATTGGAGAAGTGCATGAGGGAACAGCTACCATGGACTGGATGGAACAAGAACAAGAAAGAGGGATTACGATAACTTCTGCTGCAACCACCACATTTTGGAATAAGCATCGGATCAACATCATTGATACTCCTGGTCATGTTGACTTCACCCTTGAAGTGGAGCGAGCTCTTAGGGTGCTAGATGGAGCCATATGTTTGTTTGATAGTGTTGCTGGTGTGGAACCACAATCAGAAACTGTGTGGAGACAAGCTGATAAATATGGGGTTCCACGTATTTGTTTTGTTAACAAGATGGACCGTCTTGGAGCGAACTTTTTCCGAACAAGAGATATGATAGTGACAAATTTGGGCGCTAAACCACTTGTAATTCAGATTCCAATTGGTTCGGAAGATAACTTTAAGGGAGTTGTTGATCTTGTAAGAATGAAAGCTATAGTTTGGTCTGGAGAAGAGTTAGGTGCCAAGTTTTCTTATGAAGATATTCCAGAGGATCTTCAAGAGTTGGCTCAGGATTATCGATCCCAGATGATTGAAACAATAGTTGAGTTGGATGATCAAGCCATGGAGAACTACCTAGAAGGAAATGAACCAGATGAGGAAACCATCAAAAAATTAATTAGGAAGGGAACCATATCAGGAAACTTTGTGCCAGTAATGTGTGGCTCAGCTTTCAAAAACAAGGGGGTTCAACCGCTGCTTGATGCTGTTGTGGACTATCTACCGTCACCGATTGAGTTGCCACCAATGAAGGGAACTGACCCTGAAAACCCAGAATTGATACTAGAAAGGAAAGCAAGTGATGATGAGTCATTTTCTGGATTAGCTTTTAAGATCATGAGTGATCCATTTGTTGGTTCCCTTACGTTTGTGAGGGTGTATTCTGGAAAGCTAACTGCAGGGTCTTATGCACTCAATGCAAACAAAGGGAAGAAGGAGAGAATTGGTAGACTGCTGGAAATGCATGCTAACAGCAGGGAGGATGTTAAAGTAGCTTTAACAGGTGATATTATTGCTCTTGCAGGTTTAAAAGATACTATTACAGGTGAAACATTGTGTGACCCTGATAGTCCTGTCATGCTTGAGCGCATGGATTTTCCTGATCCTGTGATAAAGGTTGCCATTGAACCCAAAACTAAAGCTGATGTTGACAAGATGGCAACTGGTTTAATTAAGCTCGCCCAAGAAGATCCCTCTTTCCACTTCTCTAGGGATGAAGAGATTAACCAGACGGTTATTGAAGGAATGGGAGAGTTGCATCTTGAAATCATTGTTGATCGACTCAAGAGAGAATTTAAGGTGGAAGCTAATGTTGGTGCACCCCAAGTGAACTACAGGGAAAGCATTTCCAAAGTCTCAGAAGTGAAGTATGTGCACAAGAAACAGTCAGGAGGACAAGGTCAATTTGCGGATGTCACTATTCGTTTTGAACCCATGGAGGCAGGTGGTGGGTATGAGTTCAAGAGTGAGATCAAAGGAGGTGCTGTACCGAAAGAATACATTCCGGGAGTGATGAAAGGATTGGAGGAGTGTATGAGCAATGGTATACTCGCTGGATTTCCAGTCGTTGATGTACGCGCAGTACTGGTAGATGGATCTTACCATGATGTAGATTCAAGCGTCTTGGCATTCCAGTTGGCAGCAAGAGGAGCTTTCCGTGATGGAATGAGAAAAGCAGGACCAAAGATGCTTGAACCAATTATGAAAGTTGAAGTGGTTACTCCTGAAGACCATCTAGGAGATGTAATTGGTGATCTCAACTCAAGAAGAGGTCAGATCAACAGTTTTAGTGACAAACCCGGTGGCCTAAAGGTGGTTGATGCTCTGGTTCCTCTGGCTGAGATGTTTCAGTATGTGAGTACACTGAGGGGGATGACGAAGGGACGTGCGTCTTACACAATGCAATTAGCCAAGTTTGATGTGGTGCCTCAGCACATCCAAAACCAACTCTCCTCAAAGGAGCAAGAAGTTGCTGCTTAA 2361 0.4396 MATETFRVTAPSASASSLRNFNNGSPRKPSPLSPLPFMGVRPRPSRSLTSSSLSQFFGTSPIKYKSSQLSYLSHQSRRNLSVFAMAAEDASRAVPLKDYRNIGIMAHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVIQIPIGSEDNFKGVVDLVRMKAIVWSGEELGAKFSYEDIPEDLQELAQDYRSQMIETIVELDDQAMENYLEGNEPDEETIKKLIRKGTISGNFVPVMCGSAFKNKGVQPLLDAVVDYLPSPIELPPMKGTDPENPELILERKASDDESFSGLAFKIMSDPFVGSLTFVRVYSGKLTAGSYALNANKGKKERIGRLLEMHANSREDVKVALTGDIIALAGLKDTITGETLCDPDSPVMLERMDFPDPVIKVAIEPKTKADVDKMATGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADVTIRFEPMEAGGGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGILAGFPVVDVRAVLVDGSYHDVDSSVLAFQLAARGAFRDGMRKAGPKMLEPIMKVEVVTPEDHLGDVIGDLNSRRGQINSFSDKPGGLKVVDALVPLAEMFQYVSTLRGMTKGRASYTMQLAKFDVVPQHIQNQLSSKEQEVAA 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0376 786 Gene3D - 693 764 - -
Lele53g0376 786 CDD EFG_mtEFG_II 399 481 - -
Lele53g0376 786 FunFam Elongation factor G 574 704 - -
Lele53g0376 786 Hamap Elongation factor G [fusA]. 95 781 IPR004540 GO:0003746|GO:0005525|GO:0006414
Lele53g0376 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 370 IPR027417 -
Lele53g0376 786 FunFam Elongation factor G 693 764 - -
Lele53g0376 786 CDD EF-G 101 371 - -
Lele53g0376 786 SUPERFAMILY Ribosomal protein S5 domain 2-like 568 688 IPR020568 -
Lele53g0376 786 FunFam Elongation factor G 381 496 - -
Lele53g0376 786 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 97 372 IPR000795 GO:0003924|GO:0005525
Lele53g0376 786 TIGRFAM EF-G: translation elongation factor G 91 781 IPR004540 GO:0003746|GO:0005525|GO:0006414
Lele53g0376 786 Pfam Elongation factor G C-terminus 690 776 IPR000640 -
Lele53g0376 786 SMART EFG_C_a 689 777 IPR000640 -
Lele53g0376 786 TIGRFAM small_GTP: small GTP-binding protein domain 99 269 IPR005225 GO:0005525
Lele53g0376 786 FunFam Elongation factor G 497 573 - -
Lele53g0376 786 Gene3D Elongation Factor G (Translational Gtpase), domain 3 496 573 - -
Lele53g0376 786 SUPERFAMILY EF-G C-terminal domain-like 692 781 IPR035647 -
Lele53g0376 786 Pfam Elongation factor Tu GTP binding domain 98 370 IPR000795 GO:0003924|GO:0005525
Lele53g0376 786 SMART EFG_IV_2 569 687 IPR005517 GO:0005525
Lele53g0376 786 Gene3D - 574 776 IPR014721 -
Lele53g0376 786 CDD EFG_mtEFG_C 692 770 IPR035649 -
Lele53g0376 786 CDD EFG_III 494 569 IPR009022 -
Lele53g0376 786 CDD EFG_mtEFG1_IV 572 687 IPR005517 GO:0005525
Lele53g0376 786 PRINTS GTP-binding elongation factor signature 219 228 IPR000795 GO:0003924|GO:0005525
Lele53g0376 786 PRINTS GTP-binding elongation factor signature 167 177 IPR000795 GO:0003924|GO:0005525
Lele53g0376 786 PRINTS GTP-binding elongation factor signature 183 194 IPR000795 GO:0003924|GO:0005525
Lele53g0376 786 PRINTS GTP-binding elongation factor signature 101 114 IPR000795 GO:0003924|GO:0005525
Lele53g0376 786 PRINTS GTP-binding elongation factor signature 147 155 IPR000795 GO:0003924|GO:0005525
Lele53g0376 786 MobiDBLite consensus disorder prediction 1 28 - -
Lele53g0376 786 SUPERFAMILY EF-G C-terminal domain-like 493 570 IPR035647 -
Lele53g0376 786 Gene3D - 90 381 IPR027417 -
Lele53g0376 786 MobiDBLite consensus disorder prediction 1 52 - -
Lele53g0376 786 Pfam Elongation factor Tu domain 2 413 480 IPR004161 GO:0005525
Lele53g0376 786 Hamap Elongation factor G, chloroplastic. 89 786 IPR030848 GO:0003746|GO:0006414|GO:0009507
Lele53g0376 786 FunFam Elongation factor G 90 381 - -
Lele53g0376 786 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 140 155 IPR031157 -
Lele53g0376 786 Pfam Elongation Factor G, domain III 493 566 IPR041095 -
Lele53g0376 786 SUPERFAMILY Translation proteins 353 493 IPR009000 -
Lele53g0376 786 Gene3D Translation factors 382 495 - -
Lele53g0376 786 Pfam Elongation factor G, domain IV 568 686 IPR005517 GO:0005525
Lele53g0376 786 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 75 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0376 Lele-ChrLele53 3532071 3536094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0376 98 757 Eukaryotic Initiation Factors Gene Family AT1G56070 24.877 8.43e-43 165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0376 53 3532071 3536094 Lele55g1113 55 17442230 17446147 hybridization
Lele53g0376 53 3532071 3536094 Lele56g1059 56 13935331 13945056 hybridization