Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0370 ATGTCATCGTCTTCTTCTACTGCTACTGCTACGACTACTACGGCCTCTACCATATCTCAGCTGGACCACTTCCCTCCTCCTTCCGACCAGCTTTGTTATGTCCACTGCAACCTTTGTGACACTGTCCTCGCTGAGGAGATGTCAAACTCATCAAATCACTACTATTCTACTGTGCCTTCCACTACTCCTAGGGTTGCAGCAGCTGATGAGCTTCCCCGCCCACCACTCATAAACAGACCACCTGAGAAGAGGCAGAGAGTCCCATCTGCTTACAATCGCTTCATCAAGGACGAGATCCAACGCATTAAGTCTGCAAATCCTGATATTACCCACAGAGAAGCCTTCAGCGCGGCTGCCAAGAATGTATGA 369 0.4959 MSSSSSTATATTTTASTISQLDHFPPPSDQLCYVHCNLCDTVLAEEMSNSSNHYYSTVPSTTPRVAAADELPRPPLINRPPEKRQRVPSAYNRFIKDEIQRIKSANPDITHREAFSAAAKNV 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0370 122 Pfam YABBY protein 49 121 IPR006780 GO:0007275
Lele53g0370 122 MobiDBLite consensus disorder prediction 1 22 - -
Lele53g0370 122 SUPERFAMILY HMG-box 76 119 IPR036910 -
Lele53g0370 122 PANTHER PROTEIN YABBY 6-RELATED 5 50 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0370 Lele-ChrLele53 3397827 3399377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0370 70 121 C2C2-YABBY Transcription Factor Family AT2G45190 82.692 9.11e-27 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lele53g0370 YABBY 4.7e-29 CL0114