Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0367 ATGGATTTGAAGACGTCTCATGCTTCTCCTGTTCTTACTGATCCTGTTCCAATAAACAAGTCAATACTAGGAAGGCATTCTGGTCTCATAAGTTACTCGCAGCAAGATTCATCACTCTCTCCTGTTAAGTATTCAAGAAATTCTAGCTCAAGAAAGAGTTCTTCAGGAAATCTTGACGATGTTCGCATCAACGGTTGGCTCGACGCCATGCAAGCTTCTTCCCCTCCTAGGAAGAAGCAGCCCACCGAGGGCGGCTTCAACTCTCACATCGATTCCGAACAAGACTATCGTTCCTGGTTGCTGGAATATCCATCGGCGCTAGAGTGCTTCGAGGAAATGATTGAGCATGCCAAGAACAAGAAGATTGCAGTGTTCCTAGACTACGACGGAACTCTTTCACCCATAGTGGATGATCCAGATTGTGCTTTCATGTCTGACGCTATGCGCAGTGTAGTGAGGCATGTGGCAAAGTGTTTTCCAACGGCAATCATCAGTGGAAGAAGCCGAGACAAGGTTTATGATTTAGTTAAACTAACGGAACTGTACTACGCTGGAAGTCATGGGATGGACATTATTGGACCTGCTTGTCCCTCTCTCTCCAATACCCATCCACAGTACTGTGTTAAGTCCACTGACCAACAGGGAAAGGAGATAACTCTGTTCCAACCTGCTAGAGAATTCCTGCCTACGATTGATGAGGTTTTTAGAAGGCTGGTGGAAATCACAAAAGACATAAAAGGTGCAAAAGTTGAGAACCACAAGTTTTGTGTTTCTGTACATTATCGTAATGTAGAAGAAAACAATTGGACAGTTATTGGACAACTTGTGCATGACATGTTAAAACAGTACCCTCTTTTACGTTCGACACACGGACGCAAGGTTTTAGAGGTTCGTCCTGTGATAGATTGGAACAAGGGAAAAGCAGTTGAATTTTTACTCGAGTCTCTCGGGTTAAGTGAACGAGATGCCGTGCTAGCGATCTACATAGGAGATGATAAGACCGATGAAGATGCTTTCAAGGTGCTGAGAGAGAACAAAGGAGGTTATGGGATTTTAGTTTCGTCCACAAGGAAACAAAGCAATGCCTTCTATTCTCTCCGGGACCCATCTCAGGTCATGAAATTTCTGGAAATGTTGGTGAATTGGAAGAAGGAAGAAGAAAACAATCGTCAATGGAAGAGGCATTCATTCTAA 1194 0.438 MDLKTSHASPVLTDPVPINKSILGRHSGLISYSQQDSSLSPVKYSRNSSSRKSSSGNLDDVRINGWLDAMQASSPPRKKQPTEGGFNSHIDSEQDYRSWLLEYPSALECFEEMIEHAKNKKIAVFLDYDGTLSPIVDDPDCAFMSDAMRSVVRHVAKCFPTAIISGRSRDKVYDLVKLTELYYAGSHGMDIIGPACPSLSNTHPQYCVKSTDQQGKEITLFQPAREFLPTIDEVFRRLVEITKDIKGAKVENHKFCVSVHYRNVEENNWTVIGQLVHDMLKQYPLLRSTHGRKVLEVRPVIDWNKGKAVEFLLESLGLSERDAVLAIYIGDDKTDEDAFKVLRENKGGYGILVSSTRKQSNAFYSLRDPSQVMKFLEMLVNWKKEEENNRQWKRHSF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0367 397 FunFam Trehalose 6-phosphate phosphatase 230 389 - -
Lele53g0367 397 SUPERFAMILY HAD-like 123 383 IPR036412 -
Lele53g0367 397 Pfam Trehalose-phosphatase 125 370 IPR003337 GO:0003824|GO:0005992
Lele53g0367 397 Gene3D - 224 396 IPR023214 -
Lele53g0367 397 Gene3D - 122 203 IPR023214 -
Lele53g0367 397 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 45 390 IPR044651 GO:0004805|GO:0005992
Lele53g0367 397 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 124 343 IPR006379 -
Lele53g0367 397 CDD HAD_TPP 123 374 - -
Lele53g0367 397 TIGRFAM T6PP: trehalose-phosphatase 120 380 IPR003337 GO:0003824|GO:0005992
Lele53g0367 397 MobiDBLite consensus disorder prediction 39 60 - -
Lele53g0367 397 FunFam - 122 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0367 Lele-ChrLele53 3347565 3353415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0367 116 379 Trehalose Biosynthesis Gene Families AT1G70290 25.623 8.00e-10 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0367 53 3347565 3353415 Lele55g1122 55 17577704 17581371 hybridization
Lele53g0367 53 3347565 3353415 Lele56g1069 56 14041567 14041883 hybridization