Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0342 ATGGAGGAGAAGCACAAATGCAAGCTGTGCTCCAGAACTTTCGCTCACGGCAGATCACTCGGCGGCCACATGAAGGCCCATTACGCCACTCTCCCTCTTCCGCCCAAGCCTCAACCACCACCACCACCACCACCGTCACCTCCTTCGCCTTCATTCTCATGTTCTTCCTCACAAGATTCAGACGACAACGCTCTGATTTATGGCCTCAGAGAAAATCCCAAGAAAAGCTTCAGGCTCGCAGATCCTGAGTTCTCTTTCGTCGATACTACTGCTGGCTCTGTTATTATTCAGGACCGAGAGAGCGAGTCCGAGTTAAAGAACCCAACTTGTCTTCTATCCATGCGAACCAGAACCCAGAGGCTAACATCACCCAAGAGGCTTAAACCCAGTCTCTCCGAGTCGCCGCCGCCCACTAAACCCGAACCAGCGAGCTCTGTTTCTGAAACTAGTCCTGAAGAAAATGTAGCTATGTGTCTCATTATTCTCTCTAGAGACAAGTGGAAGAGAAACGCCGTGAAGGAAGAAGAAGATCGAGACGAGGAATCGAAGCGATTCAAGGAGATCAAGGTGAAGAAAGGAGTTCGCGGGAAGCATCAGTGTGAGAAATGCAGAAAAACGTTTCGATCATTTCGAGCATTGGGGAGTCACAGAAACGTCTGTTTTCGCGAAGAAGAAGAAGAAGAAGCGAGAAACGCAGGTAACAACAAGAACAACGACAATAATTCGATTTTCGAATGCCCATTTTGTTATAAGGTGTTCGGGTCGGGTCAAGCACTCGGAGGCCACAAGAGATCTCATCTTGTACAATTTTCATCGTCAACCTTAAACGATTCGGCAACATTAGTCAAGCAAAGCTTCATAGATCTCAACTTGCCAGCTCCAGTCGCCGCAGCAGCAACAGCAGAAGATGAACTCAGTGCGGTTTCTGATGCATAA 936 0.484 MEEKHKCKLCSRTFAHGRSLGGHMKAHYATLPLPPKPQPPPPPPPSPPSPSFSCSSSQDSDDNALIYGLRENPKKSFRLADPEFSFVDTTAGSVIIQDRESESELKNPTCLLSMRTRTQRLTSPKRLKPSLSESPPPTKPEPASSVSETSPEENVAMCLIILSRDKWKRNAVKEEEDRDEESKRFKEIKVKKGVRGKHQCEKCRKTFRSFRALGSHRNVCFREEEEEEARNAGNNKNNDNNSIFECPFCYKVFGSGQALGGHKRSHLVQFSSSTLNDSATLVKQSFIDLNLPAPVAAAATAEDELSAVSDA 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0342 311 ProSitePatterns Zinc finger C2H2 type domain signature. 246 266 IPR013087 -
Lele53g0342 311 SMART c2h2final6 198 218 IPR013087 -
Lele53g0342 311 SMART c2h2final6 244 266 IPR013087 -
Lele53g0342 311 SMART c2h2final6 5 27 IPR013087 -
Lele53g0342 311 MobiDBLite consensus disorder prediction 98 152 - -
Lele53g0342 311 MobiDBLite consensus disorder prediction 32 51 - -
Lele53g0342 311 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Lele53g0342 311 SUPERFAMILY beta-beta-alpha zinc fingers 198 266 IPR036236 -
Lele53g0342 311 SUPERFAMILY beta-beta-alpha zinc fingers 2 31 IPR036236 -
Lele53g0342 311 Coils Coil 222 242 - -
Lele53g0342 311 Gene3D Classic Zinc Finger 195 266 - -
Lele53g0342 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 266 IPR013087 -
Lele53g0342 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Lele53g0342 311 MobiDBLite consensus disorder prediction 106 129 - -
Lele53g0342 311 MobiDBLite consensus disorder prediction 21 69 - -
Lele53g0342 311 Pfam C2H2-type zinc finger 244 266 - -
Lele53g0342 311 Pfam C2H2-type zinc finger 5 29 - -
Lele53g0342 311 Pfam C2H2-type zinc finger 198 217 - -
Lele53g0342 311 Coils Coil 164 184 - -
Lele53g0342 311 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 311 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0342 Lele-ChrLele53 2975534 2976469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0342 3 308 C2H2 Transcription Factor Family AT3G60580 33.538 1.45e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele53g0342 zf-C2H2_6 1.3e-10 CL0361