Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0328 ATGGCTCCAAAACGGCAGACTGAGTCACCCATTAGGAAATTCATTAACCGAGGAGCTTGGACTCCCGAGGAAGATAGAAAACTTGCTCAATGCATTGAACTTCATGGTGCTAAGAGGTGGAAGTCCATTGCTCTCAAATCAGGTTTAAACAGATGTGGCAAGAGTTGCAGGCTGAGATGGCTCAACTATCTGAGGCCAAACATCAAGAGAGGCAACATTTCACTTGAAGAAGAAGATTTAATCCTCAGACTTCACAAACTCCTCGGAAACAGGTGGTCGTTGATAGCTGGTAGGCTTCCAGGACGAACAGACAATGAAATTAAAAACTACTGGAATTCTCATTTGTGCAAAAAAGTAAATGGTGAAGAGAAGAAGAAGAAGAAGAAGCCAAACGCTCCATCAACCCCACAAGAAGAAGAAAGCACACCCCAGAATACTTGGGATAGTGCTCTTAATGTGGAGAATAATAATGAGGAAGCCATTAATGGAAATAGTGGAATTGTGAACTCAGAAGTTAGCTTTGATGTGAATGAGTTCCTTGACTTCTCTCCCAAAGAAGGATCCTTTCATGAGTTGGATTGGGTGAACAAGTATCTAGAACTAGATGAGTTTCCAGGGACAGGTGGGGAATTTTGTTCCTAA 642 0.4221 MAPKRQTESPIRKFINRGAWTPEEDRKLAQCIELHGAKRWKSIALKSGLNRCGKSCRLRWLNYLRPNIKRGNISLEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNGEEKKKKKKPNAPSTPQEEESTPQNTWDSALNVENNNEEAINGNSGIVNSEVSFDVNEFLDFSPKEGSFHELDWVNKYLELDEFPGTGGEFCS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0328 213 CDD SANT 19 64 IPR001005 -
Lele53g0328 213 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lele53g0328 213 SUPERFAMILY Homeodomain-like 16 111 IPR009057 -
Lele53g0328 213 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Lele53g0328 213 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Lele53g0328 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Lele53g0328 213 Gene3D - 17 69 - -
Lele53g0328 213 MobiDBLite consensus disorder prediction 121 148 - -
Lele53g0328 213 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 14 154 - -
Lele53g0328 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Lele53g0328 213 SMART sant 16 66 IPR001005 -
Lele53g0328 213 SMART sant 69 117 IPR001005 -
Lele53g0328 213 FunFam MYB-related transcription factor 16 69 - -
Lele53g0328 213 Gene3D - 73 147 - -
Lele53g0328 213 CDD SANT 74 115 IPR001005 -
Lele53g0328 213 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Lele53g0328 213 FunFam Transcription factor TT2 73 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0328 Lele-ChrLele53 2852632 2854244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0328 4 166 MYB Transcription Factor Family AT3G13540 50.898 3.16e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele53g0328 Myb_DNA-binding 2.8e-18 CL0123