Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0327 ATGGAACCAGAACAACAAGAACCAGAAACTCTCCTTCACAGTACTAAACTTCAACCAACCACTCCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAGCACCACAGAAGCCATTAATGTACGCCACGAAGCTCACAAAGAAGAGAAAGTGAAGAAGACAAAGAAGAAGAAGACGACGAGTAACAAGAACACAGACATGGCCGACGGCGGTAAGCACCCAACGTACAGAGGCGTACGTATGCGTCAATGGGGGAAATGGGTTTCAGAAATCAGAGAGCCCAGAAAGAAATCAAGAATATGGCTCGGCACTTTCCCTACTGCAGAAATGGCGGCTAGAGCTCACGACGTCGCCGCTCTCACCATCAAAGGAAGCTCTGCTTTCCTCAACTTCCCGGAGCTAGCGACGGTTCTTCCTCGTCCGGCCAGTAACTCCCCAAAGGACGTCCAAGCCGCCGCCGCCAAGGCAGCCGCCTTCAATTACCACATAAACGGTCAAGAAGCCGAAGCCGAGTCATCCGAGGGGATTCAAGCCGACGCTCCGGCACTATCAAGTTCGCCGTTAACGGACGAGGACGACACGTTCTTCAACCTCCCCGATATCTTAAATCACGGCGGCCCAGACGAGTTTCATTACTCCTCACTCTGGCTCCTAGCTGGTGCTGATTACAGAGACTCAGCCTTCCGGCTCGAAGAGCCATTTCTATGGGACTGTTATTAG 726 0.5248 MEPEQQEPETLLHSTKLQPTTPSSSSSSSSSSSSSSTTEAINVRHEAHKEEKVKKTKKKKTTSNKNTDMADGGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALTIKGSSAFLNFPELATVLPRPASNSPKDVQAAAAKAAAFNYHINGQEAEAESSEGIQADAPALSSSPLTDEDDTFFNLPDILNHGGPDEFHYSSLWLLAGADYRDSAFRLEEPFLWDCY 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0327 241 ProSiteProfiles AP2/ERF domain profile. 77 134 IPR001471 GO:0003700|GO:0006355
Lele53g0327 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 57 205 - -
Lele53g0327 241 SUPERFAMILY DNA-binding domain 77 135 IPR016177 GO:0003677
Lele53g0327 241 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Lele53g0327 241 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Lele53g0327 241 MobiDBLite consensus disorder prediction 1 78 - -
Lele53g0327 241 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
Lele53g0327 241 SMART rav1_2 77 140 IPR001471 GO:0003700|GO:0006355
Lele53g0327 241 CDD AP2 78 136 IPR001471 GO:0003700|GO:0006355
Lele53g0327 241 FunFam Ethylene-responsive transcription factor 2 76 135 - -
Lele53g0327 241 Gene3D AP2/ERF domain 77 135 IPR036955 GO:0003700|GO:0006355
Lele53g0327 241 MobiDBLite consensus disorder prediction 8 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0327 Lele-ChrLele53 2838818 2839543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0327 72 237 AP2-EREBP Transcription Factor Family AT2G44940 53.465 2.53e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele53g0327 AP2 1.3e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0533 50 3199740 3206259 Lele53g0327 53 2838818 2839543 CCT
Lele51g0518 51 3054932 3060212 Lele53g0327 53 2838818 2839543 CCT
Lele52g0533 52 3263481 3270443 Lele53g0327 53 2838818 2839543 CCT
Lele53g0327 53 2838818 2839543 Lele55g1158 55 18142148 18142873 hybridization
Lele53g0327 53 2838818 2839543 Lele56g1107 56 14548948 14550740 hybridization