Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0325 ATGACTAGGCGGTGCTCCCATTGCAGCCATAATGGCCACAACTCCAGGACCTGTCCCAACCGTGGAGTGAAGCTATTTGGAGTCCGATTGACTGATGGGTCGATCCGGAAGAGTGCTAGTATGGGCAATCTTAGCCACTACGCCGGTTCGAGTTCGGGGCCCCATCAGACCGGGTGTAACACTCCGGGTTCTCCCGGTGAGACCCCTGATCACGGTGCGGCCGCAGACGGTTACGCCTCCGAAGATTTTGTACCTGGGTCGTCCTCAAGTTCACGTGAAAGGAAAAAGGGTGTTCCGTGGACTGAGGAGGAACATAGGATGTTTCTACTTGGATTGCAGAAGCTAGGCAAAGGCGATTGGCGTGGAATTGCACGAAATTATGTTATGTCAAGGACACCTACTCAAGTAGCCAGCCACGCTCAGAAATATTTCATTAGGCAAAGCAATGTGTCTAGGCGAAAAAGACGATCCAGCTTGTTTGATATTGCTGCAGATGAACCCGCTGACACGCCCATGGTACCGCATGACCTCCAGTCAGCTAATCAGGCAACTGCTGAAGCCGAATGCAATAACACTTTGCCTGATCCTCCAGCCATTGATGAAGAATGTGAGTCCATGGATTCCACTAATTCAAATGATGGTGATTCTGCCCCTGCCCCTTTGAAACCAGATAGCACACAGTCACAAGCACAATCACAATCACCATACCCGGTGGTATATCCTGCATACTTCTCTCCGGTCTTCCCCTTCCCGATGCCATATTGGTCAGGATACATTCCAGAGCCCAGTAAGAAGGATGAGACTCATGAGGTGCTGAAACCCACTGCAGTGCATTCTAGGAGCCCAATCAATGTTGATGAACTGGTGGGTATGTCAAAACTGAGTTTAGGAGACTCTATCGGTGACTCTGGACCTTCAACTCTCTCACTGAAACTCCTTCAAGGACCCTCGAGACAGTCGGCTTTTCACGCGACCCCGGCATATGGGAATTCCGATGTGAATGGCAGTGTGATCCATGCGCTTTAA 1026 0.5058 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLSHYAGSSSGPHQTGCNTPGSPGETPDHGAAADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIAADEPADTPMVPHDLQSANQATAEAECNNTLPDPPAIDEECESMDSTNSNDGDSAPAPLKPDSTQSQAQSQSPYPVVYPAYFSPVFPFPMPYWSGYIPEPSKKDETHEVLKPTAVHSRSPINVDELVGMSKLSLGDSIGDSGPSTLSLKLLQGPSRQSAFHATPAYGNSDVNGSVIHAL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0325 341 MobiDBLite consensus disorder prediction 209 233 - -
Lele53g0325 341 CDD SANT 99 144 IPR001005 -
Lele53g0325 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Lele53g0325 341 MobiDBLite consensus disorder prediction 189 233 - -
Lele53g0325 341 SMART sant 96 146 IPR001005 -
Lele53g0325 341 FunFam transcription factor MYB1R1 98 149 - -
Lele53g0325 341 MobiDBLite consensus disorder prediction 41 64 - -
Lele53g0325 341 MobiDBLite consensus disorder prediction 41 101 - -
Lele53g0325 341 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 95 147 IPR006447 GO:0003677
Lele53g0325 341 SUPERFAMILY Homeodomain-like 94 149 IPR009057 -
Lele53g0325 341 MobiDBLite consensus disorder prediction 1 21 - -
Lele53g0325 341 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Lele53g0325 341 Gene3D - 98 150 - -
Lele53g0325 341 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Lele53g0325 341 ProSiteProfiles SANT domain profile. 100 148 IPR017884 -
Lele53g0325 341 PANTHER TRANSCRIPTION FACTOR KUA1 3 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0325 Lele-ChrLele53 2801098 2804569 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele53g0325 Myb_DNA-binding 1.2e-10 CL0123