Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0323 ATGCTCTCAAATCACGATTTTGCCTTAAATCTCAGCTTGAGCTTCCCTCACTCTGCTCTTAATAATCCCATCAAATCTTCAGATCGGTGTTCTGAAGGAGGCAAAGGTGAATCTCGGTCGTCTCTCGGAGGAATTGATGTGAATCGATTGCCATCGGAGGTTGATTGCGAAGAGGAGGCGGGGATTTCTTCTCCGAACAGCACGATTTCGAGCGTGAGCGGTAAGAGAAGCGAGAGAGATCAGGCCAATAGTAGCGAAGAGAACGAAACCGACAGAGCTTATTCTCGAGGAATCAGCGATGAAGAAGACAACGAAACTTCCAGAAAGAAGCTCAGGCTCTCCAAAGATCAATCCGCTATCCTCGAAGAAAGCTTCAAAGAGCACAATACTCTCAATCCCAAGCAAAAGTTGGCACTGGCAAAGCAGTTAGGTCTGAGACCTCGACAAGTGGAGGTGTGGTTCCAGAACAGAAGAGCGAGGACTAAGCTGAAGCAAACGGAGGTGGATTGTGAGTTCTTGAAGAGGTGTTGTGAGAATCTGACGGAGGAGAACAGGCGGTTGCAGAAAGAGGTGCAGGAGCTGAGAGCACTTAAACTTTCCCCACAGCTGTACATGCAAATGACCCCACCCACTACTCTCACCATGTGCCCATCTTGTGAGAGGTTCGGCGGTCGGCCCATTTATCTCGGCCCATGGGCCGTTCCTCAGCCGAACTCGCGTCTTGGTCACCCCAGGTCATGA 741 0.502 MLSNHDFALNLSLSFPHSALNNPIKSSDRCSEGGKGESRSSLGGIDVNRLPSEVDCEEEAGISSPNSTISSVSGKRSERDQANSSEENETDRAYSRGISDEEDNETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQLYMQMTPPTTLTMCPSCERFGGRPIYLGPWAVPQPNSRLGHPRS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0323 246 ProSiteProfiles 'Homeobox' domain profile. 104 164 IPR001356 GO:0003677
Lele53g0323 246 Coils Coil 163 200 - -
Lele53g0323 246 MobiDBLite consensus disorder prediction 61 78 - -
Lele53g0323 246 PRINTS Lambda-repressor HTH signature 135 144 IPR000047 GO:0003677
Lele53g0323 246 PRINTS Lambda-repressor HTH signature 144 160 IPR000047 GO:0003677
Lele53g0323 246 SUPERFAMILY Homeodomain-like 99 165 IPR009057 -
Lele53g0323 246 Pfam Homeobox associated leucine zipper 164 198 IPR003106 GO:0006355|GO:0043565
Lele53g0323 246 CDD homeodomain 108 165 IPR001356 GO:0003677
Lele53g0323 246 MobiDBLite consensus disorder prediction 18 111 - -
Lele53g0323 246 ProSitePatterns 'Homeobox' domain signature. 139 162 IPR017970 GO:0000981|GO:0006355
Lele53g0323 246 Pfam Homeodomain 108 162 IPR001356 GO:0003677
Lele53g0323 246 Pfam HD-ZIP protein N terminus 17 80 IPR006712 GO:0005634
Lele53g0323 246 MobiDBLite consensus disorder prediction 79 111 - -
Lele53g0323 246 Gene3D - 112 162 - -
Lele53g0323 246 SMART halz 164 207 IPR003106 GO:0006355|GO:0043565
Lele53g0323 246 SMART HOX_1 106 168 IPR001356 GO:0003677
Lele53g0323 246 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 27 222 - -
Lele53g0323 246 FunFam Homeobox-leucine zipper protein 18 94 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0323 Lele-ChrLele53 2728235 2729363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0323 1 234 Homeobox Transcription Factor Family AT5G47370 59.925 6.71e-99 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele53g0323 HD-ZIP_N 7.6e-17 No_clan