Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0305 ATGGTTAAGCAAGGGCCTTGCTATCACTGTGGAGTTTCAAGCACACCACTTTGGCGCAATGGGCCACCAGAGAAGCCAGTGCTATGCAATGCATGTGGATCTCGATGGAGAACAAAGGGAACACTAGCAAATTATACCCCTTTACATGCTCGGACAGAAATGGATGATTATGAGGATCAAAGGCTTTCTAGGGCAAGGAACATATCATTTAATAAGAACAAAGAAGTGAAATTTCTCAAACGAAAGCAGAACCATGATGATTTAGTATCTGGTTGGGTTGCCCCTGATTGCAACCATGGATCTCAAAAGGTTATAGATGAAGATGCAAGCAATAGATCAAGTTCAGGATCAGCTGTCTCTAACTCTGAGAGCTGTGCTCAATTTGCTGGAACAGATGCTAGTGACTTGACAGGTCCTGCTCAGTCAATGGTGGGGGAAGGTATGGTTCCCTCAAAAAAGAGAACCTGTGTGAACCGTAAAAAGCCATCTCCTGTTGAGAAGCTCACAAAAGATTTGTATACTATACTTCATGAACAGCAGCCCTATTTCTCCGCATCTTCTGAAGAGGATCTTATTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTTATTAGGCACCCGAGCTCTATAGCCCGTGAAGAAGAATCTGAGGCCAGCTCCCTTTCAATTGATAACAAACAATGCCCAACGAGTGAGGCATATTCATGCTCTGGTGCTGTTGATATGCATAATGATTTCACTGGCATGAACTTTTCATCTCAGGGAATTGGAAATATCAACTACTCTGCTAGCCAAGGAATTCAGCGGGAGAGACTTAAAAGGGAGCCTGAAACTTCACAAATCCTTGGATGTGATTCACCACTGTGCTTGATAGATTTAATTGATATTGTAAACTATGAGGTGTTCTTGACAAACATGACAAATGAGGAGCAGCAAAAATTACTAAAGTGTCTCCCTGCCGTTGATACTGCTAAACTTCCTGACAGCCTTAAAAGCATGTTCAACAGCGCTCGGTTCAGAAATAACTTAAATTGCTTCCAACAGCTTCTTGGGGAAGGTGTCTTGGATACCTCTTCATTGGGGGCAATTGCTGGAGACCGCCAGGATTTGAAACGGCTTGCATTATCTGATTTTTCACAGTCAAAATGGGTGGAACAATATCATTCACTTAAGAGATGTAAATACCAAGATGAAAAATCTGTTGCTCTTGGATGTACTGGCACTGCATCCAGTAATGCTGCAAACGAGAAGAGATTGTGTGACAGCTCAAAACAAAGTTTTCCTGAACTGAAGTCAACAGTTAGGAGCCCCAAAAGGGTGATCATAATGAAGTCTGGTAGTGAGGGCAAGGAAGTCCTTGAAGATGGTGGCTCTTGCTTCAGTCCAAAAGGTCTACTGGCTTTTCCCGCTGATAGCAGCCCACATATGCTTGATTCTTTCAACTTCGTCGATGAGAGTTCTGATCAAGATCTGCTGCTCGAAGTCCGATCTAACAGTTCTTTCCCAGAAGCAGAACTGCTGCATCCAACCTTAAGATTCGGTTCTCAGCCCAGCACTAGCAGTAGCTCAGCTTACCAGTATGGTGCCCATTACTGA 1617 0.4335 MVKQGPCYHCGVSSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTEMDDYEDQRLSRARNISFNKNKEVKFLKRKQNHDDLVSGWVAPDCNHGSQKVIDEDASNRSSSGSAVSNSESCAQFAGTDASDLTGPAQSMVGEGMVPSKKRTCVNRKKPSPVEKLTKDLYTILHEQQPYFSASSEEDLIFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSIDNKQCPTSEAYSCSGAVDMHNDFTGMNFSSQGIGNINYSASQGIQRERLKREPETSQILGCDSPLCLIDLIDIVNYEVFLTNMTNEEQQKLLKCLPAVDTAKLPDSLKSMFNSARFRNNLNCFQQLLGEGVLDTSSLGAIAGDRQDLKRLALSDFSQSKWVEQYHSLKRCKYQDEKSVALGCTGTASSNAANEKRLCDSSKQSFPELKSTVRSPKRVIIMKSGSEGKEVLEDGGSCFSPKGLLAFPADSSPHMLDSFNFVDESSDQDLLLEVRSNSSFPEAELLHPTLRFGSQPSTSSSSAYQYGAHY 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0305 538 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Lele53g0305 538 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 291 400 IPR044867 -
Lele53g0305 538 PANTHER OSJNBB0038F03.10 PROTEIN 7 532 IPR044589 -
Lele53g0305 538 MobiDBLite consensus disorder prediction 519 538 - -
Lele53g0305 538 MobiDBLite consensus disorder prediction 100 123 - -
Lele53g0305 538 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 45 - -
Lele53g0305 538 Gene3D - 3 86 IPR013088 GO:0006355|GO:0008270
Lele53g0305 538 MobiDBLite consensus disorder prediction 107 123 - -
Lele53g0305 538 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Lele53g0305 538 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Lele53g0305 538 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Lele53g0305 538 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Lele53g0305 538 Pfam Asx homology domain 292 367 IPR028020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0305 Lele-ChrLele53 2553507 2558997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0305 1 515 C2C2-Gata Transcription Factor Family AT4G17570 49.719 1.52e-138 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele53g0305 ASXH 2.4e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0476 49 2841410 2843437 Lele53g0305 53 2553507 2558997 CCT
Lele53g0305 53 2553507 2558997 Lele55g1186 55 18484412 18492267 hybridization
Lele53g0305 53 2553507 2558997 Lele56g1137 56 14850365 14855757 hybridization