Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0277 ATGGAGTTTTAGCGACAGAGGAACGATGCTAAACCAGCTATGGTTTGCACTGCTAACGATATACAGGAGTGGAAAGATTTTCCAAAGGGACTTAGGGTTCTTCTCCTTGATGGAGACAGCAGTTCTGCTTCGGAGATAAGAACAAAGCTTGAGGCCATGGACTATATCGTTTCTACATTCTGTGATGAGAATGAAGCCTTGTCAGCAATCTCCAGCAAACCTGAAGGCTTCCATGTTGCCATAGTGGAGGTTAGTACCAGCAGCCCGGGAAGTTTCAAAATTCTTGAGTATGCTAAAGAATTGCCCACCATCATGACTTCAAACAATCACTGCTTGAGCACCATGATGAAGTGTGTAGCGCTTGGTGCAGTTGAGTTCCTAAGCAAACCACTCTCTGAGGAAAAACTCAGGAATATCTGGCAGCATGTTGTTCACAAGGCATTCAACACTGGGACAATTGTCCTGCCTAAATCACTAGAAACTGTCAAAGAATCTGAGGTATTGGAGCTTCAAACAGACGGTGGAGAGCATGGAAGTGTAAATTTAGAGGAGTCTCGGTTCAGTGATGGTGACCATGAGCAGTCTTCAGGAAGTGACAAGTACCCAGCTCCTTCGACTCCACAATTAAAACAGGGGGAAAGGTTAAGGGACGATGGAGATTGCCAAGAACAAATTAACTGTTCAACAGAAAAGGAAAGTGAGGACCATGATGGGGAATGTAAATTTGTCGAAACTACTTGTGGGGTTTTGAATCCTGAAGGTAATTGTCAACCAGTAAAACCTGAAAAGGCTCTGAACATGGAGGATGAGAACCTTGCAAATGATTCTAAGAGTGAGAAAGTTGTTTCTCAACCTGTAAATGATAGTGTTCTCAGCAACATTGAAAGTGATACTGTATCTCCAAACAAAGCAGGTGTTCGTAGTGATTCCCGTGAAATCAAAACTAAGAAGAAGGTAGACTGGACACCTCAGCTGCACAAAAAGTTTGTGAAGGCAGTGGAACAATTAGGGGTTGATCAAGCAATTCCTTCTCGGATACTGGAGCTGATGAATGTGGAGGGCTTGACAAGACATAATGTGGCGAGTCATCTTCAGAAATATAGAATGCATAGGAGGCAAATCTTGCCGAAGGAAGATCGAAGATGGGCACAAAGTCCAGTTATGGCTTTCCCTCCATATTATTCTAACTGCACCCCATCACCAGCGCCTGTGTATCCTTTCTGGAGACAATCTGGCAGTCAACCAGCCAGTATGCATGCTCGGGACCCACCTGGTTATCCCCCATGGCATCGTGCTGAAAGTTGGCACTGGAAGCCATATCATTGGATACATGCAGATGCGTGGGGTTGCCCAGTATTGTCATCTGTTCAAAGTCCTTGTATTTCGTACTCACAAAATATACCTGGATGGCACAATGCTAATGCAGTTAATTATAGCGCCAGCAAGTCACAAAATTCCTGTGAATATCATCCAGCAGAAGATGTTGTTGACAAGGCAGTGAATGAGGCAATAAGCAAGCCATGGCTACCAATGCCTTTAGGCCTCAAACCTCCTTCCATTGATTGTGTGTTGACTGAGCTCTCTAGGCAAGGCATTTCCACCATCCCTCCTTGGTCCCGGCATTCTAAACCCGAACCTGAACCCAAACCCCAGTGA 1656 0.4487 MEFXRQRNDAKPAMVCTANDIQEWKDFPKGLRVLLLDGDSSSASEIRTKLEAMDYIVSTFCDENEALSAISSKPEGFHVAIVEVSTSSPGSFKILEYAKELPTIMTSNNHCLSTMMKCVALGAVEFLSKPLSEEKLRNIWQHVVHKAFNTGTIVLPKSLETVKESEVLELQTDGGEHGSVNLEESRFSDGDHEQSSGSDKYPAPSTPQLKQGERLRDDGDCQEQINCSTEKESEDHDGECKFVETTCGVLNPEGNCQPVKPEKALNMEDENLANDSKSEKVVSQPVNDSVLSNIESDTVSPNKAGVRSDSREIKTKKKVDWTPQLHKKFVKAVEQLGVDQAIPSRILELMNVEGLTRHNVASHLQKYRMHRRQILPKEDRRWAQSPVMAFPPYYSNCTPSPAPVYPFWRQSGSQPASMHARDPPGYPPWHRAESWHWKPYHWIHADAWGCPVLSSVQSPCISYSQNIPGWHNANAVNYSASKSQNSCEYHPAEDVVDKAVNEAISKPWLPMPLGLKPPSIDCVLTELSRQGISTIPPWSRHSKPEPEPKPQ 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0277 551 Pfam Myb-like DNA-binding domain 319 368 IPR001005 -
Lele53g0277 551 SUPERFAMILY CheY-like 29 146 IPR011006 -
Lele53g0277 551 MobiDBLite consensus disorder prediction 168 221 - -
Lele53g0277 551 ProSiteProfiles Response regulatory domain profile. 32 144 IPR001789 GO:0000160
Lele53g0277 551 FunFam Two-component response regulator 312 375 - -
Lele53g0277 551 FunFam Two-component response regulator-like APRR2 30 154 - -
Lele53g0277 551 Gene3D - 313 374 - -
Lele53g0277 551 SUPERFAMILY Homeodomain-like 314 372 IPR009057 -
Lele53g0277 551 MobiDBLite consensus disorder prediction 179 196 - -
Lele53g0277 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 313 372 IPR017930 -
Lele53g0277 551 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 316 370 IPR006447 GO:0003677
Lele53g0277 551 Gene3D - 31 150 - -
Lele53g0277 551 PANTHER TRANSCRIPTION ACTIVATOR GLK1 14 538 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0277 Lele-ChrLele53 2276494 2281242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0277 14 536 Response Regulator Gene Family AT4G18020 49.217 5.04e-134 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele53g0277 Myb_DNA-binding 4.8e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0432 49 2531245 2536337 Lele53g0277 53 2276494 2281242 CCT
Lele53g0277 53 2276494 2281242 Lele55g1213 55 18760328 18765650 hybridization
Lele53g0277 53 2276494 2281242 Lele56g1162 56 15081953 15086214 hybridization