Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0261 ATGGGAAGTGCACCATTACCACCAGGTTTTCGTTTCCACCCAACAGACGAAGAACTGGTTGGATATTATCTAAAGAGAAAAGTAGAAGGGCTTGAAATAGAGCTTGAGGTTATCCCAGTCATTGACTTGTACAAATTTGATCCATGGGAATTGCCAGATCGAACCAAGTGGATCATGCATGAGTATCGACTCAACAATGACTCTGATCTCTCATCACCTAGTTTTCATGGTGGTTTTGGTTTCGCATTGTGCAGAGTGATGAAGAAGAATGAGAAGGCGAAGGATTCGCAGGAAGAACAAAAGGACAAGGCAGAAGGAAGTAGTTGCACCAGTGGGAATGAAGCAGCTTCAATGAAGACTTCTCCATACCATGCTGCTCCAACAATGGCAGAGCTAGAGCAAGCTTCTTCACATTTTGATGACTCTACTGAATTAATTCTAGATTCTTCCAAGGACTACTCTCAAGTACCAGATACCATGTCTGGATACTTTCCAGAGTACGACTTATCATGTTCAATGACTCCATGGCAACCATTCCTACCAACAGAAAATTCAACCTCTTCATCTTACTCAAATGTAAATGGAGAAATTGAACTTTCTGAAGATGTCAGTCAATTTGGCTACTTCTATGGGAATGAGCATGTGTCTCATGAAGGCTTTGATCAAATCAATTCATTCAGATATCTAAAACCGTTCTGA 699 0.4106 MGSAPLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDLYKFDPWELPDRTKWIMHEYRLNNDSDLSSPSFHGGFGFALCRVMKKNEKAKDSQEEQKDKAEGSSCTSGNEAASMKTSPYHAAPTMAELEQASSHFDDSTELILDSSKDYSQVPDTMSGYFPEYDLSCSMTPWQPFLPTENSTSSSYSNVNGEIELSEDVSQFGYFYGNEHVSHEGFDQINSFRYLKPF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0261 232 Pfam No apical meristem (NAM) protein 7 55 IPR003441 GO:0003677|GO:0006355
Lele53g0261 232 Gene3D NAC domain 55 95 IPR036093 GO:0003677|GO:0006355
Lele53g0261 232 MobiDBLite consensus disorder prediction 92 120 - -
Lele53g0261 232 SUPERFAMILY NAC domain 3 89 IPR036093 GO:0003677|GO:0006355
Lele53g0261 232 Gene3D NAC domain 15 54 IPR036093 GO:0003677|GO:0006355
Lele53g0261 232 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 54 - -
Lele53g0261 232 ProSiteProfiles NAC domain profile. 6 153 IPR003441 GO:0003677|GO:0006355
Lele53g0261 232 Coils Coil 87 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0261 Lele-ChrLele53 2168922 2170118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0261 1 55 NAC Transcription Factor Family AT4G17980 85.455 5.49e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele53g0261 NAM 7.2e-14 No_clan