Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0258 ATGGGTTGCACTGTAAGGGAAAAGCACCTCCGAGCGAATCGGAGGCCTCGATCCTCCAAGCCCGATATGGATTCCTGTTGTTATCTCGACAAGGCTTCCATCTCCAAATCTATGCTGGAATCAAGCATGAAGCCTTTGGAAAACCATCTCGCTCTCAACGATTCTTCTCAAAATCTAAATTCCAACTCTAATCCTACCCTTAACCCTAATTTCTCCCTTAATATTGAGGAAACCGGATGGGGTTACTGCACCGAAGAACAATTAGAAGAAATTCTATTAAAAAACTTGGAATATTTATATAATGAAGCTGTATCAAAGCTTGTTGCGTTGGGCTACGATGAGGACATTGCCATCCAAGCAATATTGCGAAATGGGCACTGTTATGGTGGAATGGATGTGCTCACCAATATATTACATAATTCGTTGGCTTATTTGAATAGTAACTGTAGTAGTACCAGTACTAGTAGTAATGGCAATTCCGATGAGTCCGATCCTGTTTTCTCTGACTTGAGGCAGTTGGAGGAGTACTCTCTGGAAGGTATGGTCGGTTTGCTACAACAAGTCAGGCCGCATTTCAGTAAAGGCGATGCTATGTGGTGTTTGCTTATGAGTGATCTTCATGTAGGACGGGCAAGTGCTATGGAAATTCCAGTGCTTCCTGCTCCAGGTAATGGTTGTCCAGCTCCTAGTGGCTCTGAGGCTGTTAGCAATTCAGTTGGTGTTTTGGCCCCTGCCCTGTATAGGTTTCATGGGGGTTGGGGATTTGGAAATGGGGGAGGCTCAGATCTCCCCTTCAATGAGTTCTTCTCTTATAGTGCAGAGATGAATTTACAAAGAGATATTGAACTTCCCAAAAGTTTTAATCTTTCTCCTTCAATGAAGTCTTTATTGAGAAGAAATGTTGCAATGTTTGCTGCTGGTTTTAGGGCAAATTCAAAACAATTGCAGGCACAGGCTAAGCCGTCACCTGGCGCTAGCACTTTGTCAAGCTTGGAATCTGCAGCTGTATCTGGGACTAATGTCCCAACTGAGCAGTCTGGGAATTCTCAGAATCTGAATACCCATGATGCCGTGAACTCAGTGTTGAGCAAATTCCGTGATCTGAATCTTGATGAGAATTTGGAGTTTGTGACAGATGATCAGAAAGATGAGGTAATTGTCACTCTATTTCATCAGATTAAGGATCTTGAGAAACAGGTAAAGGAGCGAAAAGATTGGGCCCATCAGAAGGCAATGCAGGCCGCAAGAAAGCTTAGCAATGATTTGACTGAGCTGAAAATGTTGAGGATGGAAAGAGAGGAGACTCAGAGATTGAAGAAAGGGAAACAGGCGCTTGAGGACACAACCATGAAAAGACTCTCAGAGATGGAGAATGCCTTAAGAAAGGCCAGTGGTCAAGTGGACCGTGCAAATGCAGCTGTGAGACGGCTTGAGACAGAGAATGCAGAAATTAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAATCAGTCACAACTTGCTTGCAAGCTGCAAAGAGGGAGAAAAAGTGCATGAAGAGGCTTGTAGCTTGGGAAAAACAGAAAGCTCAGCTACAGCAAGAGATTTCAGCTGAGAAAGAGAAGATATTGGAGATGCAAGAAGAATTGGTCCGGATTAAACAGCGTCAAAAAGATGCTGAGGTCAAGTGGAGGGAGGAGTTGAAGGCTAAAGAGGAAGCCTTAGGTTTAGTTGAGGAGGAGCGACGCGCTAAGGAAGCAGCGGAGGCTAATAATAAGCGGAAGCTTGAAGCTTTGCGCCTAAAGATAGAGATAGATTTCCAGCGCCACAAGGATGACCTCCTAAGACTTGAGCAGGAGCTCTTACGCTTAAAAGCATCTGTTCAGTCTGCTGAGTTTCAAAATCAATCTAATACTTCACTTACAAGCGAATCTGAGGGTGCAAAGCCCCAAAGAGAGACAATTGCAAAGATGCTTCAAGAATTAGATAAACTGGAGGCATTTTCAGATAAACAAGTAAACTGTGATAGGGAATGCTTAATATGCATGAAAGATGAAGTCTCGGTTGTTTTCTTGCCTTGTGCTCACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGGCTGAGAAAGGGCAGAGCTGCATGTCCTTGCTGTCACGTTCCCATTGAGCAGAGGATTCGCGTATTTGGGGCAAGTTCGTAG 2187 0.4403 MGCTVREKHLRANRRPRSSKPDMDSCCYLDKASISKSMLESSMKPLENHLALNDSSQNLNSNSNPTLNPNFSLNIEETGWGYCTEEQLEEILLKNLEYLYNEAVSKLVALGYDEDIAIQAILRNGHCYGGMDVLTNILHNSLAYLNSNCSSTSTSSNGNSDESDPVFSDLRQLEEYSLEGMVGLLQQVRPHFSKGDAMWCLLMSDLHVGRASAMEIPVLPAPGNGCPAPSGSEAVSNSVGVLAPALYRFHGGWGFGNGGGSDLPFNEFFSYSAEMNLQRDIELPKSFNLSPSMKSLLRRNVAMFAAGFRANSKQLQAQAKPSPGASTLSSLESAAVSGTNVPTEQSGNSQNLNTHDAVNSVLSKFRDLNLDENLEFVTDDQKDEVIVTLFHQIKDLEKQVKERKDWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTTCLQAAKREKKCMKRLVAWEKQKAQLQQEISAEKEKILEMQEELVRIKQRQKDAEVKWREELKAKEEALGLVEEERRAKEAAEANNKRKLEALRLKIEIDFQRHKDDLLRLEQELLRLKASVQSAEFQNQSNTSLTSESEGAKPQRETIAKMLQELDKLEAFSDKQVNCDRECLICMKDEVSVVFLPCAHQVMCASCSDEYGLRKGRAACPCCHVPIEQRIRVFGASS 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0258 728 PANTHER OS05G0141500 PROTEIN 1 723 IPR046934 -
Lele53g0258 728 SUPERFAMILY RING/U-box 661 720 - -
Lele53g0258 728 MobiDBLite consensus disorder prediction 1 23 - -
Lele53g0258 728 Pfam Zinc finger, C3HC4 type (RING finger) 670 719 - -
Lele53g0258 728 Pfam Family of unknown function (DUF6592) 95 214 IPR046527 -
Lele53g0258 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 658 725 IPR013083 -
Lele53g0258 728 MobiDBLite consensus disorder prediction 315 353 - -
Lele53g0258 728 ProSiteProfiles Zinc finger RING-type profile. 673 714 IPR001841 -
Lele53g0258 728 Coils Coil 509 557 - -
Lele53g0258 728 Coils Coil 562 592 - -
Lele53g0258 728 Coils Coil 453 494 - -
Lele53g0258 728 Coils Coil 601 628 - -
Lele53g0258 728 SMART ring_2 673 713 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0258 Lele-ChrLele53 2144646 2149042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0258 673 724 C3H Transcription Factor Family AT1G73950 42.308 1.08e-06 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0446 50 2560880 2563009 Lele53g0258 53 2144646 2149042 CCT
Lele51g0428 51 2468466 2470590 Lele53g0258 53 2144646 2149042 CCT
Lele52g0444 52 2627610 2629712 Lele53g0258 53 2144646 2149042 CCT
Lele49g0416 49 2415567 2418667 Lele53g0258 53 2144646 2149042 CCT
Lele53g0258 53 2144646 2149042 Lele56g1174 56 15207853 15208398 hybridization