Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0255 ATGCCAGTTCCACTTGCCCCTTACCCTACACCCCCAGCTCCATATACGCCTCCAGCTAATGGTACACAACAACAGAGTCAGCTTGTGTGTTGTGGGTGTAGAAACCTTCTTCTCTATCCAGTTGGAGCAACATCTGTGTGCTGTGCTGTTTGCAATGCATTCACTGCAGTGCCACCTCCTGGCACAGAAATGGCTCAGTTGGTTTGTGGAGCCTGCCACACCTTACTCATGTACATACGCGGGGCGACAAGCGTGCAATGTTCCTGCTGTCACATCGTGAATGTAGCTCTAGAAGCAAATCAAGTGGCACATGTCAATTGTAGCAACTGTAGGATGCTACTGATGTACCAATATGGAGCAAGATCTGTTAAATGTGCAGTCTGCAATTTTGTAACATCTGTTGGGGCCACAGCAAGCACAATTGAGCAGAAGTTCAGCGCCTAA 444 0.4842 MPVPLAPYPTPPAPYTPPANGTQQQSQLVCCGCRNLLLYPVGATSVCCAVCNAFTAVPPPGTEMAQLVCGACHTLLMYIRGATSVQCSCCHIVNVALEANQVAHVNCSNCRMLLMYQYGARSVKCAVCNFVTSVGATASTIEQKFSA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0255 147 PANTHER PROTEIN LSD1 16 57 IPR040319 -
Lele53g0255 147 Pfam LSD1 zinc finger 30 53 IPR005735 -
Lele53g0255 147 Pfam LSD1 zinc finger 69 93 IPR005735 -
Lele53g0255 147 Pfam LSD1 zinc finger 107 131 IPR005735 -
Lele53g0255 147 MobiDBLite consensus disorder prediction 1 20 - -
Lele53g0255 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 104 134 IPR005735 -
Lele53g0255 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 66 94 IPR005735 -
Lele53g0255 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Lele53g0255 147 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0255 Lele-ChrLele53 2121834 2123710 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lele53g0255 zf-LSD1 1.1e-10 No_clan