Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0252 ATGGATTCACGGGAACCGCCTCAGCCTCCTCACCCGTCGCAACTACAGTCGATGGCACAAGCACAACCACCGTCGACGGTGCCAAGCATGATGATGGGACCGCCTTCGTATGGTTCTGCCATGCCAAACCCGAACACATCTCCCATGATCAGCCCCAATTCGACGGCCGCGATGATGGCCCCTGCCACCGCCGCACGATTCCCTTTCAACACCGTGGTTCCGCAACCCCCTGCTCCGTCTAAACCTATGGAACATCTAAACAACAATGTTAGTCCTTTCGATGTGTCTTCGTCCGCGATGAGGCCATGTGGGGTTAGTAGTGATTCTACGAAGAAGAAGAGAGGCCGGCCGAGGAAGTATTCGCCGGATGGTAACATTGCTTTGGGTTTGTCTCCCACGCCCATGTCTACTTCTGCTGGTCAAGGAGGTTCGACTGGTACACCTTCGACGGAACCTGGAGCGAAGAAGCACAGGGGAAGGCCACCGGGTTCTGGAAAGAAGCAGCTGGATGCTCTTGGAGCTGGCGGTGTTGGTTTTACTCCGCACGTAATATTGGTAAAAGCCGGTGAGGACATTGCTGGAAAGATTGTGGCCTTTTCACAGCAAGGGCCTAGGACAGTTTGTATTCTTTCGGCAATTGGTGCAATCAGCAATGTTACCCTTAGACAGGCAGCAATTTCTGGTGGTACTGTGCAATATGAGGGCCGATTTGAGATCATATCTCTATCAGGTTCTTTCCTGCCATGTGATGATAATGATCGTAACAGAGCAGGTGGTTTTAGCGTGTCTCTTGCGGGATCAGATGGTAAAGTTTTAGGTGGTGGAGTTGCTGGAATGCTAATCGCCGCATCACCAGTGCAGGTCATTGTGGGTAGCTTTATTGCTGATGGGAAAAAGTCAAGCTCCAATATTCAGAAATCAGGGGCTTCTTCAGCACCAGGCTACCAAATGTTAAATTTTGGTGCATATACAACTTCTACCAGCCCAACCTCTCAAGGCGCTTCATCTGAGTCCTCTGAAGAGCATGACAACAATAATGGTGATTTTAATAGAGGACCTGCACTCTACAATAATAATAATAGTAACCAGCCTATTCACAATATGCAGATGTATCATCCTCAACTATGGGCTGGTCAAACCCAGCAGTGA 1149 0.497 MDSREPPQPPHPSQLQSMAQAQPPSTVPSMMMGPPSYGSAMPNPNTSPMISPNSTAAMMAPATAARFPFNTVVPQPPAPSKPMEHLNNNVSPFDVSSSAMRPCGVSSDSTKKKRGRPRKYSPDGNIALGLSPTPMSTSAGQGGSTGTPSTEPGAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVKAGEDIAGKIVAFSQQGPRTVCILSAIGAISNVTLRQAAISGGTVQYEGRFEIISLSGSFLPCDDNDRNRAGGFSVSLAGSDGKVLGGGVAGMLIAASPVQVIVGSFIADGKKSSSNIQKSGASSAPGYQMLNFGAYTTSTSPTSQGASSESSEEHDNNNGDFNRGPALYNNNNSNQPIHNMQMYHPQLWAGQTQQ 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0252 382 MobiDBLite consensus disorder prediction 323 340 - -
Lele53g0252 382 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 54 344 IPR039605 GO:0003680
Lele53g0252 382 MobiDBLite consensus disorder prediction 39 55 - -
Lele53g0252 382 MobiDBLite consensus disorder prediction 1 55 - -
Lele53g0252 382 CDD DUF296 180 293 IPR005175 -
Lele53g0252 382 SUPERFAMILY AF0104/ALDC/Ptd012-like 179 294 - -
Lele53g0252 382 MobiDBLite consensus disorder prediction 350 366 - -
Lele53g0252 382 SMART AT_hook_2 111 123 IPR017956 GO:0003677
Lele53g0252 382 SMART AT_hook_2 155 167 IPR017956 GO:0003677
Lele53g0252 382 Gene3D - 181 307 - -
Lele53g0252 382 Pfam Plants and Prokaryotes Conserved (PCC) domain 181 293 IPR005175 -
Lele53g0252 382 MobiDBLite consensus disorder prediction 323 366 - -
Lele53g0252 382 ProSiteProfiles PPC domain profile profile. 175 314 IPR005175 -
Lele53g0252 382 MobiDBLite consensus disorder prediction 82 105 - -
Lele53g0252 382 MobiDBLite consensus disorder prediction 130 151 - -
Lele53g0252 382 MobiDBLite consensus disorder prediction 69 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0252 Lele-ChrLele53 2100052 2105305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0252 81 333 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 50.704 3.43e-73 233