Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0249 ATGGGTACAGAGAATGGCCTCCTCTCCATGACCCAGATCCAAAAATTGTCACAATCCCAATACAACCACTATCCCAATCACCTTCTTCTTCAACCTCATCCCCTCCCAAACCCTAGCTCTTCTTCTTCTTCAACCTCCTGCTGGATCATGTGGAACCCTAGGGATCCTCAGGAAGAAGATGACTCGTGGGAGGTTAGAGCCTTTGCGCAAGACACCACCAACATCATGGGCACCACTTGGCCTCCCAGGTCCTACACCTGCACTTACTGTCGAAGGGAGTTCCGTTCAGCCCAAGCTCTTGGCGGCCACATGAACGTCCACCGCCGTGACCGTGCCCGTCTCCACCACCAGCCACCACCCTCTGCTGCTGCTGCTTCCGTTCATCACAGCAACCTAATCTCATCACCTCATCATCATCATCAAGAGCTTGTTGCAAACAACGGCAGATTCTTTCTCTACCATTTGCCAAGCCCTGACGGGATCGGAAACTTGACTGGTACTAGTAATACTACTACTAATCCTCTTGCTTCATCTTCTTTGATTGCATGTGGAGAATCGGTATCACCCACCAGGCTTCTCTCCATTATGCCCTACCCACCGAGCAACTTTGTGTCAACTAGCACCCCCTCCTATGATTTTCAAGCGGAGCGGCGGCCTGCTGGATTCATCAATTCTTCTTGCTGTGATTCTACCGAATTGGAACAGCCCGCAACCTCCTCGTTTGCCGGAAACGGCGGCCATGAGCTTGATCTAGAGCTCCGGCTGGGGCACAGACCCCCACCAAGCAGAAATAAAAAACGGTGTGTAGAGGATAAGAGTAACTAG 825 0.5164 MGTENGLLSMTQIQKLSQSQYNHYPNHLLLQPHPLPNPSSSSSSTSCWIMWNPRDPQEEDDSWEVRAFAQDTTNIMGTTWPPRSYTCTYCRREFRSAQALGGHMNVHRRDRARLHHQPPPSAAAASVHHSNLISSPHHHHQELVANNGRFFLYHLPSPDGIGNLTGTSNTTTNPLASSSLIACGESVSPTRLLSIMPYPPSNFVSTSTPSYDFQAERRPAGFINSSCCDSTELEQPATSSFAGNGGHELDLELRLGHRPPPSRNKKRCVEDKSN 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0249 274 SMART c2h2final6 85 107 IPR013087 -
Lele53g0249 274 MobiDBLite consensus disorder prediction 252 274 - -
Lele53g0249 274 Pfam C2H2-type zinc finger 85 109 - -
Lele53g0249 274 Gene3D Classic Zinc Finger 72 135 - -
Lele53g0249 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Lele53g0249 274 PANTHER OS07G0101800 PROTEIN 57 259 - -
Lele53g0249 274 SUPERFAMILY beta-beta-alpha zinc fingers 82 112 IPR036236 -
Lele53g0249 274 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0249 Lele-ChrLele53 2066224 2067048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0249 50 260 C2H2 Transcription Factor Family AT4G17810 39.171 4.48e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele53g0249 zf-C2H2_6 3.3e-07 CL0361