Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0246 ATGGACCCATCTGCAGCCACCACCTGGTTTTCTGATCTGGAAATGGATGATTACGATTTGTTTCCGATGCAATGCCACCTGATGAACGGTATCGATGATGATCAGTTTATTTCACATGACATAGCCAGTGTTCTTCAGGGACAATCGTATTTGCAGCCATCTTTGTCTTCTGAGAGCTATTCTTCGTATAATCCATGCACTGCTGAAACTAGCCTTGATGGGGCTTCTTTGCAGTTCAAATCCACCATTTCTGAACCTTCATCATCTTCTTCTCCTCAATTCCTGTCTTTTGATAACTCTAATAATTTCACCTCTTCTTCCCCTACCAACTGCACCAACCTCTTTAACAGTTTTGACTCAGCAACGACCTTGAAGCCATCAAACAAGGATCATGTACAGTATTTCCCAGCTCAATCCCCTAATAATGGGTTTTCCCAAAATCACAACTTTGAACCCAAATCCACCCAAAGCATCATCAATAGGCCTATCCCTCACGTCCGTGATCACATCATGGCTGAGAGAAAACGAAGAGAAAAGCTCAGCCAGAGCTTCATTGCACTTTCAGCCCTCGTCCCTGGCCTCAAAAAGATGGATAAGAATTCGGTGATCGGGGATGCTATCAAGTACGTGAAGGAGCTGAAGGAGAGACTGACATTGCTGGAAGAACAAAACAAGAAAAGAAGGGTTGAATCAGTGGTTAGAGTAAAGAAATCGAAACTGTACGAGGAAGATGATGATGAAGAAGAAGAAGGAGTTGCTCAAGTGGAAGCAAGAGCGTTGGAGAAGGACGTACTGATTCGGATCCACTGCCAGAAACACAAGGGACTTCTGGTGAAGATACTTGCAGAGATTCAGAATCTTCATCTTTTTGTTGTCAACAGCAGCGTCTTGCCATTCGGGGACTCCAATCTTGACGTCACCATTATTGCTCAGATGGCGGAAGATTGCAGCTTGACGATGAGTGATCTCGTAAAGAACATACGAATGGCTATTTTAAGTGTCTGTGACTGA 1011 0.4392 MDPSAATTWFSDLEMDDYDLFPMQCHLMNGIDDDQFISHDIASVLQGQSYLQPSLSSESYSSYNPCTAETSLDGASLQFKSTISEPSSSSSPQFLSFDNSNNFTSSSPTNCTNLFNSFDSATTLKPSNKDHVQYFPAQSPNNGFSQNHNFEPKSTQSIINRPIPHVRDHIMAERKRREKLSQSFIALSALVPGLKKMDKNSVIGDAIKYVKELKERLTLLEEQNKKRRVESVVRVKKSKLYEEDDDEEEEGVAQVEARALEKDVLIRIHCQKHKGLLVKILAEIQNLHLFVVNSSVLPFGDSNLDVTIIAQMAEDCSLTMSDLVKNIRMAILSVCD 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0246 336 PANTHER BHLH TRANSCRIPTION FACTOR 51 331 - -
Lele53g0246 336 Pfam Helix-loop-helix DNA-binding domain 169 213 IPR011598 GO:0046983
Lele53g0246 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 229 IPR036638 GO:0046983
Lele53g0246 336 SMART finulus 170 219 IPR011598 GO:0046983
Lele53g0246 336 CDD bHLH_AtNAI1_like 165 238 - -
Lele53g0246 336 Coils Coil 203 230 - -
Lele53g0246 336 Gene3D - 166 230 IPR036638 GO:0046983
Lele53g0246 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0246 Lele-ChrLele53 2041857 2043369 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0246 6 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.031 3.50e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele53g0246 HLH 6.8e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0403 49 2338478 2339860 Lele53g0246 53 2041857 2043369 CCT
Lele53g0246 53 2041857 2043369 Lele55g1240 55 18966698 18972195 hybridization
Lele53g0246 53 2041857 2043369 Lele56g1188 56 15336524 15341891 hybridization