Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0243 ATGCCTCGTACGAAGCGTGTGCGACCTCTTTTATATCCCCCTCTCACCATTTCCTTCTTTCATCTCATCATCTTCTTCTCCTTCCACTGCGATCAGATCACTTCTCAGAACCAGATTATGGAAATTGCCTCCGCCATGTACTCCACCAACGAATTGAATTATCAGGGCATGGAGGATTCTACATTGTTTGAGCAGCTCCCCATTGATTATTTCGATGGCCTTGATTTCCAATCCTTGGTCTCCGACAATTATTCCTGTTATGAGCGTCCCAATAACTCCAAGAGAAAACTGAATCCTCATTCTATTATTTCCCCACAGGCACCAACACTCAAGACCAATAACAGTGCTTCTGCTTCCAATTCTTTATCCACCCTCATTTCTTTTGACAACTCCAATATGAAGCTCGAAACCCTGAATAATGACAACGTTTTCAATTTTGCGTCTTTAAGCTCTCATCAAGGTGCATACTATGAAGACATCAATTTCGTACAACAAGCTCAGAAACTGACCAACGTGACCAGAAATCCACTCCAAGCTCAAGATCACGTCCTGTCCGAAAGACGACGAAGGGAAAAGCTCAACCAGAAGTTCATCGCTCTCTCCTCCATCATTCCTGGCCTCAAGAAGATGGACAAGGCGTCAGTGTTGGGAGATGCTATAGAGTACGTAAAACAGCTGAAGGAACGCCAAAGGATTCTTGAAGAACAAGTGGCCATGAGAACAAAGGAATCTGCAGTCCTAACAAGAAGATCCATTCTCTCTGCCGACGATGATAACTCGCTGCCCAGGGATGAAATTTCCGACCAGCCTCTTGCAGAAATCGAAGCCAGAGTTTTGGGTAAAGATGTTCTAATCAGAATCCAATGCGAGAAACACAAGGAGTGTGATGCTAAAATTCTGAGAGAATTAAAAAACCTTGGTCTCACTGTTCAAAGCAGTAGCATCTTGCAATTTGGCGAAACCACCCTATGTATAACTATCATAGCTCAGTATGACAGCGAAGGATTTCGTGGCAAGGCTGAGGAAGGCATTGACATTATTGGATCGTGCATAGCTTGCCAATTACGCTAG 1071 0.4398 MPRTKRVRPLLYPPLTISFFHLIIFFSFHCDQITSQNQIMEIASAMYSTNELNYQGMEDSTLFEQLPIDYFDGLDFQSLVSDNYSCYERPNNSKRKLNPHSIISPQAPTLKTNNSASASNSLSTLISFDNSNMKLETLNNDNVFNFASLSSHQGAYYEDINFVQQAQKLTNVTRNPLQAQDHVLSERRRREKLNQKFIALSSIIPGLKKMDKASVLGDAIEYVKQLKERQRILEEQVAMRTKESAVLTRRSILSADDDNSLPRDEISDQPLAEIEARVLGKDVLIRIQCEKHKECDAKILRELKNLGLTVQSSSILQFGETTLCITIIAQYDSEGFRGKAEEGIDIIGSCIACQLR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0243 356 Pfam Helix-loop-helix DNA-binding domain 181 227 IPR011598 GO:0046983
Lele53g0243 356 Gene3D - 174 237 IPR036638 GO:0046983
Lele53g0243 356 SMART finulus 183 232 IPR011598 GO:0046983
Lele53g0243 356 Coils Coil 223 243 - -
Lele53g0243 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 250 IPR036638 GO:0046983
Lele53g0243 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983
Lele53g0243 356 PANTHER BHLH TRANSCRIPTION FACTOR 57 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0243 Lele-ChrLele53 2015061 2016371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0243 173 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 52.410 1.23e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele53g0243 HLH 3.5e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0431 50 2452972 2454245 Lele53g0243 53 2015061 2016371 CCT
Lele51g0412 51 2379193 2380656 Lele53g0243 53 2015061 2016371 CCT
Lele52g0429 52 2524146 2527913 Lele53g0243 53 2015061 2016371 CCT
Lele53g0243 53 2015061 2016371 Lele55g1241 55 18979808 18980969 hybridization
Lele53g0243 53 2015061 2016371 Lele56g1189 56 15357304 15358465 hybridization