Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0230 ATGGGTTTTCCTTCTGATTCTACTCCCTCAGACCTCGAGCTTGTTCTAGGGCTAGCAGGTTCCACTACTACTCCCAAGAAATTACCTTCCTCAAATAATCTCACTGTTACCAGCGGTGTTTGTGAGCCTTCTTTGACGTTGGCTCTCTCCGCCGACACTTACAAGATTGATGTGAATATCAAAGCTAATAATAATAATAATTGTGAGGAAACGCCTCTTGATCACTTGTCTCGCCAGATTTCTTCGCCTCACAGTATGGTTTCGTCCTTCTCCGGTGGTTGTAGGAGGGTGAAGAGGGAGAGAGATCTCAGCAGCGAGCTGGAGGCTGAGGCCGAGAGGGTTTCTTCCAGAGTCAGCGACGAAGATGAAGATGGCACTAATGCCAGGAAGAAGCTCCGGCTAACCAAAGAACAATCTGCTCTCCTCGAGGAAAGCTTTAAACAGCACAGCACTCTCAACCCTAAGCAAAAGCAGGCCTTAGCCAGGCAGTTAAATCTACGGCCTCGCCAGGTTGAAGTTTGGTTCCAGAATCGAAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGCGAGTTTTTGAAGAAATGTTGTGAGACGCTGACGGACGAGAACAGGAGGCTGCAGAAAGAGCTGCAAGAGCTGAAGGCACTGAAGCTATCTCAGCCGTTGTACGTGCCTATGCCGGCGGCGACGCTCACCATGTGCCCGTCTTGTGAGAGGCTGGGCGGCGGCGTTGGGGACGCCGTCGTCGGAGCTTCCAATAAGACCCCATTCTCCATGACTCCCAAGTCGACTCATCACCTGTACAACCCCTTCAACAACCCTTCCGCAGCATGTTGA 843 0.5125 MGFPSDSTPSDLELVLGLAGSTTTPKKLPSSNNLTVTSGVCEPSLTLALSADTYKIDVNIKANNNNNCEETPLDHLSRQISSPHSMVSSFSGGCRRVKRERDLSSELEAEAERVSSRVSDEDEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLSQPLYVPMPAATLTMCPSCERLGGGVGDAVVGASNKTPFSMTPKSTHHLYNPFNNPSAAC 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0230 280 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Lele53g0230 280 Coils Coil 191 221 - -
Lele53g0230 280 CDD homeodomain 129 186 IPR001356 GO:0003677
Lele53g0230 280 Gene3D - 133 183 - -
Lele53g0230 280 SMART HOX_1 127 189 IPR001356 GO:0003677
Lele53g0230 280 Pfam Homeobox associated leucine zipper 185 219 IPR003106 GO:0006355|GO:0043565
Lele53g0230 280 SMART halz 185 228 IPR003106 GO:0006355|GO:0043565
Lele53g0230 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 30 262 - -
Lele53g0230 280 Coils Coil 97 117 - -
Lele53g0230 280 MobiDBLite consensus disorder prediction 101 129 - -
Lele53g0230 280 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
Lele53g0230 280 Pfam Homeodomain 129 183 IPR001356 GO:0003677
Lele53g0230 280 FunFam Homeobox-leucine zipper protein 18 114 190 - -
Lele53g0230 280 SUPERFAMILY Homeodomain-like 127 193 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0230 Lele-ChrLele53 1894909 1896077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0230 1 280 Homeobox Transcription Factor Family AT4G37790 58.844 1.82e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele53g0230 Homeodomain 1.7e-16 CL0123