Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0221 ATGCCTCTAAGGAGTACTAATGGCCGACCCAGCAGGAGAAGATGGTACCATCGCATTTGTTTAATGAGCAGTGCTGATGATGGTTCAGACTCATCGGAATCCGAAACCCAAGATTTCCCTCCTCCACCTAATATACCCGACGATCACCTTTTCCCGCCGCCGGAGATGCCAAGCCCAGCTTCTGAAGATGATTGGCCACTTCACCCGCCGCCTCCACCTCCGCCTCCGTTTATGCGAAACCATGATCTTGTTCAACGACCAATCCATGAGAATATAACTGAAATCTTGAGAGATGAAGATGATCATCATCATGGTCAAGCGAAAATGGATGGGGTTAGGAATATGGTAATAACGGAGGCGATTACAAGAGAGAAAGCCATATGTCCCATATGCAAGGATGAGTTCAAATTGGGAGGAAATGCAGGCAAATTACCTTGTGACCATTTCTTTTGCTTTGAATGCATTCATGGTTGGCTCAACCTTAACGAAAACAATAATACTTGCCCTGTTTGTCGTCTTCGCTTGCCTTCCGGGGAGGATTTCCGACGACCGCCGCAATTCGGAGGGCCACCACCACCTCAACTTCTTGATGGTCCCTGGCAAAATTTCTTCTCTCCTCCTGTGACGATTCTTAGTGTCCGATCAGAACTTCTTGATGATGATGAAACTCAGTCGTCACCTTCCCCGTCAGTGAACAATAGTGAAGCTGGTTATGACACTGCTCGCGACGAGCTTGATGCATCTCACGCCTGTTCCTAG 759 0.4796 MPLRSTNGRPSRRRWYHRICLMSSADDGSDSSESETQDFPPPPNIPDDHLFPPPEMPSPASEDDWPLHPPPPPPPPFMRNHDLVQRPIHENITEILRDEDDHHHGQAKMDGVRNMVITEAITREKAICPICKDEFKLGGNAGKLPCDHFFCFECIHGWLNLNENNNTCPVCRLRLPSGEDFRRPPQFGGPPPPQLLDGPWQNFFSPPVTILSVRSELLDDDETQSSPSPSVNNSEAGYDTARDELDASHACS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0221 252 SUPERFAMILY RING/U-box 109 178 - -
Lele53g0221 252 MobiDBLite consensus disorder prediction 215 252 - -
Lele53g0221 252 ProSitePatterns Zinc finger RING-type signature. 146 155 IPR017907 -
Lele53g0221 252 SMART ring_2 128 171 IPR001841 -
Lele53g0221 252 MobiDBLite consensus disorder prediction 222 237 - -
Lele53g0221 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 63 176 - -
Lele53g0221 252 MobiDBLite consensus disorder prediction 24 74 - -
Lele53g0221 252 MobiDBLite consensus disorder prediction 39 74 - -
Lele53g0221 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 186 IPR013083 -
Lele53g0221 252 ProSiteProfiles Zinc finger RING-type profile. 128 172 IPR001841 -
Lele53g0221 252 Pfam Ring finger domain 128 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0221 Lele-ChrLele53 1806036 1806794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0221 105 178 C3H Transcription Factor Family AT1G68180 36.486 4.12e-13 65.1