Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0201 ATGAGGAACAAACACGGCAAGCCAACAAATTTATGTTGCAATGCAGGGAGCAGATTTTCTGCATTTTCTGTGGTGTGGAGCTTGGTAGGATGCATTCTTTTGATTCATTTCTATTCCAATATTCATCAAAGAGAGAGGGAAGGTGGAGAGGTTCGATTGCGAGTAAGCCGTCATCCCCAACTCCGTGAGCTTCAACAGGTGGAGGAGGAGGAGAACATCCGAATTCCCCCACCAAAGGGAAAGAGATCCCCTAGGGCAGCAAAACGTAGACCTAAGCGCGCAACCACAGTGATTGATGAATTCCTTGATGAAAATTCACAACTGAGACACCTATTTTTTCCTGGTCACAAAAGGGTTATAGATACAGCAAACGCTGGGGATGAAAGTTATTATTACTACCCCGGCAGAATCTGGTTGGATACAGATGGAAATCCTATTCAAGCCCATGGAGGTGGCATTCTGTATGATAAAAACTCGAGGACATACTATTGGTATGGTGAATATAAAGATGGGCCCACTTACCGTGCTCACAAGAAAGGAGCTGCACGCGTGGACGTTATAGGAGTTGGCTGTTATTCTTCCCAGGATTTGTGGACTTGGAAAAATGAGGGAATTGTATTGGCGGCAGTGGAAACAAATGAAACTCATGACCTGCACAAGTCCAATGTGCTTGAGAGGCCAAAAGTGATTTACAACGACAAAACTAGAAAATATGTGATGTGGATGCACATAGATGATGCAAATTATACAAAAGCTGCTGTCGGGGTAGCAGTCAGTGATACTCCTGATGGTCCTTTTGATTATCTTGGTAGCCAAAGGCCACATGGATATGAAAGCAGGGATATGACAGTTTTCAAGGATGATGATGGTGTGGCATATCTAATATACTCTTCTGAGGAAAATAGTGTACTGCACATTGGACCCTTAACTGAAGATTATCTTAATGTGACTTCTGTCATGAGAAGGATCCTAGTGGGACAGCACAGAGAAGCGCCTGCTCTATTCAAGCACCAGGGCACATACTATATGATCACATCCGGCTGCACTGGGTGGGCCCCGAATGAGGCACTGGCTCATGCATCTGATTCAATATTGGGGCCATGGGAAACAATGGGAAATCCATGCGTCGGAGGGAACAAAGTATTTCGACTGACAACTTTCTTCGCTCAGAGCACTTTTGTGCTCCCTATACCTGGATACCCTGGTTCATTTATTTTTATGGCAGATCGGTGGAATCCTGCAGACCTAAGGGACTCAAGATATGTATGGTTACCTTTGATAGTGGCAGGACCTGTTGATCAACCTCTGGAGTACAATTTTGAGTTCCCATTATGGTCAAGAGTTTCTGTCTTTTGGCATAGAAAATGGAGACTGCCTCTGGGATGGCGGGGATTCATATAA 1401 0.4461 MRNKHGKPTNLCCNAGSRFSAFSVVWSLVGCILLIHFYSNIHQREREGGEVRLRVSRHPQLRELQQVEEEENIRIPPPKGKRSPRAAKRRPKRATTVIDEFLDENSQLRHLFFPGHKRVIDTANAGDESYYYYPGRIWLDTDGNPIQAHGGGILYDKNSRTYYWYGEYKDGPTYRAHKKGAARVDVIGVGCYSSQDLWTWKNEGIVLAAVETNETHDLHKSNVLERPKVIYNDKTRKYVMWMHIDDANYTKAAVGVAVSDTPDGPFDYLGSQRPHGYESRDMTVFKDDDGVAYLIYSSEENSVLHIGPLTEDYLNVTSVMRRILVGQHREAPALFKHQGTYYMITSGCTGWAPNEALAHASDSILGPWETMGNPCVGGNKVFRLTTFFAQSTFVLPIPGYPGSFIFMADRWNPADLRDSRYVWLPLIVAGPVDQPLEYNFEFPLWSRVSVFWHRKWRLPLGWRGFI 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0201 466 CDD GH43_CtGH43-like 146 426 - -
Lele53g0201 466 PANTHER GLYCOSYL HYDROLASE 43 FAMILY MEMBER 24 459 - -
Lele53g0201 466 MobiDBLite consensus disorder prediction 68 92 - -
Lele53g0201 466 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Lele53g0201 466 SUPERFAMILY Arabinanase/levansucrase/invertase 144 427 IPR023296 -
Lele53g0201 466 Gene3D Glycosyl hydrolase domain; family 43 115 441 IPR023296 -
Lele53g0201 466 Pfam Glycosyl hydrolases family 43 187 371 IPR006710 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0201 Lele-ChrLele53 1679129 1681749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0201 9 459 Glycoside Hydrolase AT5G67540 70.346 0.0 688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0361 49 2126847 2133024 Lele53g0201 53 1679129 1681749 CCT
Lele53g0201 53 1679129 1681749 Lele55g1284 55 19316672 19325392 hybridization
Lele53g0201 53 1679129 1681749 Lele56g1233 56 15677374 15680267 hybridization